GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001173-TA|BGIBMGA001173-PA|IPR001604|DNA/RNA
non-specific endonuclease
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0745 + 35937173-35938256,35938994-35939721                       31   1.2  
09_02_0147 - 4968360-4969151,4969959-4970369,4970856-4970921,497...    30   2.1  
01_07_0256 - 42328795-42329172,42330245-42330379,42330783-423310...    30   2.1  
04_04_1262 + 32200823-32201190,32201311-32201818,32201927-322020...    29   4.9  

>03_06_0745 + 35937173-35938256,35938994-35939721
          Length = 603

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 253 NNPYYTQAEARNLQFCTDRCRNNNAFNWVGWQPDR 287
           NN +YT + A ++Q C     N N+  W  W P +
Sbjct: 466 NNGHYTASSAYHVQCCGTPSTNFNSLIWKAWAPGK 500


>09_02_0147 -
           4968360-4969151,4969959-4970369,4970856-4970921,
           4972164-4972233,4972311-4972369
          Length = 465

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 117 NMIAG-FVGNALADRYVTSTQFLARGHLAAKTDFIY 151
           N+ AG FV  ALA R++  T+ +A+G+L AK D  +
Sbjct: 120 NIGAGNFVAAALAARFLRMTEAVAKGNLVAKLDSFF 155


>01_07_0256 -
           42328795-42329172,42330245-42330379,42330783-42331033,
           42331290-42331341,42331619-42331647,42331812-42332105,
           42332229-42332378,42333915-42334405,42334513-42334613,
           42334941-42335037,42335882-42335950,42336036-42336122,
           42336423-42336494,42336795-42336863,42337784-42337858,
           42338230-42338301,42338378-42338449,42338533-42338676,
           42339106-42339177,42339294-42339365,42339804-42339954,
           42340204-42340297
          Length = 1008

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 25  LPEPGQLAFVLNEDEFEDYLDAYLALQQSEMLANQTRNDFRSGCTFRVNGDLGQPQPVYI 84
           L  PG   FV  E +F+ YL + L+L   ++  +Q    +  G   ++N  L      Y 
Sbjct: 484 LKSPGFWDFVPYEGQFQQYLSSGLSLSSYQLEVSQFM--WEEGPRVKMNLKLFPNNTAYF 541

Query: 85  HRGNYLSPTGNTAGNFFPGVAVNSAYTQVSQRNMIAGFVGNALADRYVTS 134
           ++   L   G   G   P   +   Y  +   N   G+  N   DR  +S
Sbjct: 542 NKSEVLRLRGMFTGWLIPDSDIFGPYELL---NFNPGWYNNLFPDRAKSS 588


>04_04_1262 +
           32200823-32201190,32201311-32201818,32201927-32202031,
           32202222-32202287,32202471-32202536,32202698-32202751,
           32202895-32203041
          Length = 437

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 141 GHL-AAKTDFIYATGQRASFYFINAAPQWQP 170
           GH  AA   F  A G R S  F N AP W P
Sbjct: 219 GHAPAAAAKFAQAVGARDSLQFTNDAPFWNP 249


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.137    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,820,288
Number of Sequences: 37544
Number of extensions: 361311
Number of successful extensions: 779
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 4
length of query: 318
length of database: 14,793,348
effective HSP length: 82
effective length of query: 236
effective length of database: 11,714,740
effective search space: 2764678640
effective search space used: 2764678640
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 60 (28.3 bits)