GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001173-TA|BGIBMGA001173-PA|IPR001604|DNA/RNA
non-specific endonuclease
         (318 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34597| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.71 
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)       30   2.2  
SB_44379| Best HMM Match : Peptidase_M28 (HMM E-Value=6.6e-11)         30   2.9  
SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)            29   3.8  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_21142| Best HMM Match : Endonuclease_NS (HMM E-Value=0)             29   6.6  
SB_49280| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_34597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 188 GQAGYHTMVYTGTFR-VTQLRNQNNRLVDIFLHRASNGALQIP 229
           G     T + TG+ R +TQ  + N+RL++ FL R ++GA  +P
Sbjct: 4   GMGKTETSIETGSTREITQTDHLNSRLLNAFLDRLNSGANDVP 46


>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
          Length = 1577

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 140  RGHLAAKTDFIYATGQRA--SFYFINAAPQWQPFNAGNWNRLEQNLRRRIGQAGYHTMVY 197
            RGH+    D  Y   +    +F   N APQ+  FN  +W  LE  +R     +G    V 
Sbjct: 1341 RGHMVPNADHDYDEYRPTMNTFLLSNIAPQYHKFNIRDWLNLEIYVRDL--ASGSTIYVI 1398

Query: 198  TGTFRVTQLRNQNNRLVDIFLHRASNGALQIPVPLYFYKVV 238
            +G           +   +I      +    + +P +FYK++
Sbjct: 1399 SGPIFDEDADGNRDHDNNITRWIKDDRPNTVAIPTHFYKII 1439


>SB_44379| Best HMM Match : Peptidase_M28 (HMM E-Value=6.6e-11)
          Length = 1098

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 93  TGNTAGNFFPGVAVNSAYTQVSQRNMIAGFVGNALADRYV 132
           +GNT+ NF   ++V++       RN+IA   G+   DRYV
Sbjct: 352 SGNTSSNFTIKLSVHNKLAITKIRNVIATIKGSEEPDRYV 391


>SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)
          Length = 618

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 77  GQPQPVYIHRGNYLS---PTGNTAGNFFPGVAVNSAY 110
           G PQP Y   GN  S   P+GNT   ++P     S Y
Sbjct: 564 GNPQPRYYPSGNLQSRYYPSGNTQSRYYPSGNPQSRY 600


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 228  IPVPLYFYKVVHDSSRRLGTAFISINNPYYTQAEARNLQFCTD 270
            + +PL+   +  D SR L  AF+ +++ Y  Q     L  C D
Sbjct: 1734 LEIPLFSLALAPDGSRELQQAFLKVSDHYLRQGNFHLLLECLD 1776


>SB_21142| Best HMM Match : Endonuclease_NS (HMM E-Value=0)
          Length = 387

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 139 ARGHLAAKTDFIY-ATGQRASFYFINAAPQWQPFNAGNWNRLEQNLRRRIGQAGYHTMVY 197
           +RGH+A   D  +       +F+  N  PQ    N+  W RLE +  R + +      V 
Sbjct: 157 SRGHMAPAADCRFDQQAMSETFFLSNVVPQDLNNNSSFWYRLE-SYCRYLTKHYSDVHVV 215

Query: 198 TGTFRVTQLRNQNNRLVDIFLHRASNGALQIPVPLYFYKVV---HDSSRRLGTAFISINN 254
           TG   +    ++N      F+     G   + VP + +K +    +    L  AFI  N 
Sbjct: 216 TGPLFLPSEEDENGG--KKFVKYEVIGDNNVAVPTHLFKAILAETEGKPALLGAFIVPNQ 273

Query: 255 PYYTQAEARNLQFCTDR 271
           P     + +  Q   ++
Sbjct: 274 PISFDRDLKEFQVSIEK 290


>SB_49280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 240 DSSRRLGTAFISINNPYYTQAEARNLQFCTDRCRNNNAFNWV 281
           +S +R   A IS  +P  T A+ R LQF +  C+ N    W+
Sbjct: 116 NSEKRRSNARIS-GSPNLTDAQLRELQFLSKECKEN--LEWI 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.137    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,260,173
Number of Sequences: 59808
Number of extensions: 424777
Number of successful extensions: 858
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 855
Number of HSP's gapped (non-prelim): 7
length of query: 318
length of database: 16,821,457
effective HSP length: 82
effective length of query: 236
effective length of database: 11,917,201
effective search space: 2812459436
effective search space used: 2812459436
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 60 (28.3 bits)