GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001173-TA|BGIBMGA001173-PA|IPR001604|DNA/RNA
non-specific endonuclease
         (318 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB020523-1|BAA76752.1|  368|Homo sapiens endonuclease G-like pro...    41   0.007
BC016351-1|AAH16351.1|  297|Homo sapiens endonuclease G protein.       37   0.11 
BC004922-1|AAH04922.1|  297|Homo sapiens endonuclease G protein.       37   0.11 
AL441992-12|CAI15412.1|  297|Homo sapiens endonuclease G protein.      37   0.11 
BC104213-1|AAI04214.1|  228|Homo sapiens ENDOGL1 protein protein.      36   0.14 
BC104212-1|AAI04213.1|  228|Homo sapiens ENDOGL1 protein protein.      36   0.14 
X79444-1|CAA55963.1|  297|Homo sapiens endonuclease protein.           34   0.57 
AB020735-1|BAA76753.1|  149|Homo sapiens endonuclease G-like pro...    33   1.0  
AK055470-1|BAB70928.1|  127|Homo sapiens protein ( Homo sapiens ...    32   3.1  
AF217411-1|AAF71230.1|  828|Homo sapiens neuroligin 3 isoform HN...    32   3.1  

>AB020523-1|BAA76752.1|  368|Homo sapiens endonuclease G-like
           protein-1 protein.
          Length = 368

 Score = 40.7 bits (91), Expect = 0.007
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 139 ARGHLAAKTDFIYATGQRA-SFYFINAAPQWQPFNAGNWNRLEQNLRRRIGQAGYHTMVY 197
           +RGH+A   +  +++   A +FY  N  PQ    N+G WNR+E    R + +      V 
Sbjct: 137 SRGHMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNSGYWNRIEMYC-RELTERFEDVWVV 195

Query: 198 TGTFRVTQLRNQNNRLVDIFLHRASNGALQIPVPLYFYKVV 238
           +G   + Q R    ++V   +    N    + VP + YKV+
Sbjct: 196 SGPLTLPQTRGDGKKIVSYQVIGEDN----VAVPSHLYKVI 232


>BC016351-1|AAH16351.1|  297|Homo sapiens endonuclease G protein.
          Length = 297

 Score = 36.7 bits (81), Expect = 0.11
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 140 RGHLAAKTDFIYAT-GQRASFYFINAAPQWQPFNAGNWNRLEQNLRRRIGQAGYHTMVYT 198
           RGHLAA  +  ++      +FY  N APQ    N   WN LE+   R + ++  +  V T
Sbjct: 139 RGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEK-YSRSLTRSYQNVYVCT 197

Query: 199 GTFRVTQLRNQNNRLVDIFLHRASNGALQIPVPLYFYKVV 238
           G   + +        V   +     G   + VP +F+KV+
Sbjct: 198 GPLFLPRTEADGKSYVKYQV----IGKNHVAVPTHFFKVL 233


>BC004922-1|AAH04922.1|  297|Homo sapiens endonuclease G protein.
          Length = 297

 Score = 36.7 bits (81), Expect = 0.11
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 140 RGHLAAKTDFIYAT-GQRASFYFINAAPQWQPFNAGNWNRLEQNLRRRIGQAGYHTMVYT 198
           RGHLAA  +  ++      +FY  N APQ    N   WN LE+   R + ++  +  V T
Sbjct: 139 RGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEK-YSRSLTRSYQNVYVCT 197

Query: 199 GTFRVTQLRNQNNRLVDIFLHRASNGALQIPVPLYFYKVV 238
           G   + +        V   +     G   + VP +F+KV+
Sbjct: 198 GPLFLPRTEADGKSYVKYQV----IGKNHVAVPTHFFKVL 233


>AL441992-12|CAI15412.1|  297|Homo sapiens endonuclease G protein.
          Length = 297

 Score = 36.7 bits (81), Expect = 0.11
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 140 RGHLAAKTDFIYAT-GQRASFYFINAAPQWQPFNAGNWNRLEQNLRRRIGQAGYHTMVYT 198
           RGHLAA  +  ++      +FY  N APQ    N   WN LE+   R + ++  +  V T
Sbjct: 139 RGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEK-YSRSLTRSYQNVYVCT 197

Query: 199 GTFRVTQLRNQNNRLVDIFLHRASNGALQIPVPLYFYKVV 238
           G   + +        V   +     G   + VP +F+KV+
Sbjct: 198 GPLFLPRTEADGKSYVKYQV----IGKNHVAVPTHFFKVL 233


>BC104213-1|AAI04214.1|  228|Homo sapiens ENDOGL1 protein protein.
          Length = 228

 Score = 36.3 bits (80), Expect = 0.14
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 158 SFYFINAAPQWQPFNAGNWNRLEQNLRRRIGQAGYHTMVYTGTFRVTQLRNQNNRLVDIF 217
           +FY  N  PQ    N+G WNR+E    R + +      V +G   + Q R    ++V   
Sbjct: 17  TFYLSNIVPQDFDNNSGYWNRIEMYC-RELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQ 75

Query: 218 LHRASNGALQIPVPLYFYKVV 238
           +    N    + VP + YKV+
Sbjct: 76  VIGEDN----VAVPSHLYKVI 92


>BC104212-1|AAI04213.1|  228|Homo sapiens ENDOGL1 protein protein.
          Length = 228

 Score = 36.3 bits (80), Expect = 0.14
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 158 SFYFINAAPQWQPFNAGNWNRLEQNLRRRIGQAGYHTMVYTGTFRVTQLRNQNNRLVDIF 217
           +FY  N  PQ    N+G WNR+E    R + +      V +G   + Q R    ++V   
Sbjct: 17  TFYLSNIVPQDFDNNSGYWNRIEMYC-RELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQ 75

Query: 218 LHRASNGALQIPVPLYFYKVV 238
           +    N    + VP + YKV+
Sbjct: 76  VIGEDN----VAVPSHLYKVI 92


>X79444-1|CAA55963.1|  297|Homo sapiens endonuclease protein.
          Length = 297

 Score = 34.3 bits (75), Expect = 0.57
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 140 RGHLAAKTDFIYAT-GQRASFYFINAAPQWQPFNAGNWNRLEQNLRRRIGQAGYHTMVYT 198
           RGHLAA  +  ++      +FY    APQ    N   WN LE+   R + ++  +  V T
Sbjct: 139 RGHLAAAANHRWSQKAMDDTFYLSKVAPQVPHLNQNAWNNLEK-YSRSLTRSYQNVYVCT 197

Query: 199 GTFRVTQLRNQNNRLVDIFLHRASNGALQIPVPLYFYKVV 238
           G   + +        V   +     G   + VP +F+KV+
Sbjct: 198 GPLFLPRTEADGKSYVKYQV----IGKNHVAVPTHFFKVL 233


>AB020735-1|BAA76753.1|  149|Homo sapiens endonuclease G-like
           protein-2 protein.
          Length = 149

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 158 SFYFINAAPQWQPFNAGNWNRLEQNLRRRIGQAGYHTMVYTGTFRVTQLRNQNNRLVDIF 217
           +FY  N  PQ    N+G WNR+E    R + +      V +G   + Q R    ++V   
Sbjct: 17  TFYLSNIVPQDFDNNSGYWNRIEMYC-RELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQ 75

Query: 218 LHRASNGALQIPVPLYFYK 236
           +    N    + VP + YK
Sbjct: 76  VIGEDN----VAVPSHLYK 90


>AK055470-1|BAB70928.1|  127|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30908 fis, clone FEBRA2006150. ).
          Length = 127

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 279 NWVGWQPDRIDLGYSFCC 296
           NW+ W+P+  D+G  FCC
Sbjct: 107 NWLQWKPEAEDIGTKFCC 124


>AF217411-1|AAF71230.1|  828|Homo sapiens neuroligin 3 isoform HNL3
           protein.
          Length = 828

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 23  TDLPEPGQLAFVLNEDEFEDYLDAYLALQQSEMLANQTRNDFRSGCTFRVNGDLGQPQPV 82
           T + EP +    LN   +    D   A +Q E LA+   ND       R +G   +P  V
Sbjct: 132 TYIQEPNEDCLYLNV--YVPTEDGSGAKKQGEDLAD---NDGDEDEDIRDSG--AKPVMV 184

Query: 83  YIHRGNYLSPTGNTAGNFFPGVAVNSAYTQVSQRNMIAGFV 123
           YIH G+Y+  TGN      P    N     ++ R  + GF+
Sbjct: 185 YIHGGSYMEGTGNMIDGSIPASYGNVIVITLNYRVGVLGFL 225


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.324    0.137    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,590,378
Number of Sequences: 224733
Number of extensions: 1851961
Number of successful extensions: 3121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3119
Number of HSP's gapped (non-prelim): 10
length of query: 318
length of database: 73,234,838
effective HSP length: 90
effective length of query: 228
effective length of database: 53,008,868
effective search space: 12086021904
effective search space used: 12086021904
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 65 (30.3 bits)