Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001173-TA|BGIBMGA001173-PA|IPR001604|DNA/RNA
non-specific endonuclease
(318 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF390558-1|AAK72007.1| 308|Caenorhabditis elegans ced-3 proteas... 39 0.004
AF003740-4|AAL08030.1| 308|Caenorhabditis elegans Ced-3 proteas... 39 0.004
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 4.4
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 4.4
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 4.4
Z74029-1|CAA98431.1| 293|Caenorhabditis elegans Hypothetical pr... 29 5.8
U64599-11|ABD94099.1| 324|Caenorhabditis elegans Regulator of g... 29 5.8
U64599-10|AAL11463.1| 424|Caenorhabditis elegans Regulator of g... 29 5.8
U64599-9|AAL65791.1| 782|Caenorhabditis elegans Regulator of g ... 29 5.8
U64599-7|AAL11462.1| 819|Caenorhabditis elegans Regulator of g ... 29 5.8
AY569308-1|AAS75452.1| 819|Caenorhabditis elegans RGS-7A protein. 29 5.8
AB080201-1|BAB85494.1| 782|Caenorhabditis elegans C2-RGS protei... 29 5.8
U29614-6|AAA68809.2| 378|Caenorhabditis elegans Hypothetical pr... 28 7.6
>AF390558-1|AAK72007.1| 308|Caenorhabditis elegans ced-3 protease
suppressor 6 protein.
Length = 308
Score = 39.1 bits (87), Expect = 0.004
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 140 RGHLAAKTDFIYATGQRA---SFYFINAAPQ-WQPFNAGNWNRLEQNLRRRIGQAGYHTM 195
RGHLAA + + Q A +FY N +PQ + FN WN LE + RR+ + ++
Sbjct: 146 RGHLAAAGN--HRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEMHC-RRVAKKMINSY 202
Query: 196 VYTGTFRVTQLRNQNNRLVDIFLHRASNGALQIPVPLYFYKV 237
+ TG + +L + + + +N + VP +F+KV
Sbjct: 203 IITGPLYLPKLEGDGKKYIKYQVIGDNN----VAVPTHFFKV 240
>AF003740-4|AAL08030.1| 308|Caenorhabditis elegans Ced-3 protease
suppressor protein 6 protein.
Length = 308
Score = 39.1 bits (87), Expect = 0.004
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 140 RGHLAAKTDFIYATGQRA---SFYFINAAPQ-WQPFNAGNWNRLEQNLRRRIGQAGYHTM 195
RGHLAA + + Q A +FY N +PQ + FN WN LE + RR+ + ++
Sbjct: 146 RGHLAAAGN--HRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEMHC-RRVAKKMINSY 202
Query: 196 VYTGTFRVTQLRNQNNRLVDIFLHRASNGALQIPVPLYFYKV 237
+ TG + +L + + + +N + VP +F+KV
Sbjct: 203 IITGPLYLPKLEGDGKKYIKYQVIGDNN----VAVPTHFFKV 240
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 67 GCTFRVNGDLGQPQP-VYIHRGNYLSPTGNTAGNFFPGVAVNSAYTQVS 114
GC F +N D G +P Y H G +L+ G + A + A QV+
Sbjct: 2046 GCAFEMNEDAGTMEPKCYCHGGFHLTSDGKSCERDEEDDATSQAVLQVT 2094
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 67 GCTFRVNGDLGQPQP-VYIHRGNYLSPTGNTAGNFFPGVAVNSAYTQVS 114
GC F +N D G +P Y H G +L+ G + A + A QV+
Sbjct: 2109 GCAFEMNEDAGTMEPKCYCHGGFHLTSDGKSCERDEEDDATSQAVLQVT 2157
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 67 GCTFRVNGDLGQPQP-VYIHRGNYLSPTGNTAGNFFPGVAVNSAYTQVS 114
GC F +N D G +P Y H G +L+ G + A + A QV+
Sbjct: 2109 GCAFEMNEDAGTMEPKCYCHGGFHLTSDGKSCERDEEDDATSQAVLQVT 2157
>Z74029-1|CAA98431.1| 293|Caenorhabditis elegans Hypothetical
protein C45B11.3 protein.
Length = 293
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 89 YLSPTGNTAGNFFPGVAVNSAYTQVSQRNMIAGFVGNALADRYVTSTQ 136
+LS G++AGN + +SAY +S+ + F GN L D + TQ
Sbjct: 212 FLSHGGDSAGNRKASIMADSAYAILSKDS--KKFTGNFLIDEELLQTQ 257
>U64599-11|ABD94099.1| 324|Caenorhabditis elegans Regulator of g
protein signalingprotein 7, isoform e protein.
Length = 324
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 45 DAYLALQQSEMLANQTRN--DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTAGN 99
D Y + S+M T N D+ S + NG G P+ + +HR S T T+ N
Sbjct: 18 DYYRSTGSSDMRGRSTNNLLDYTSASS-STNGSAGGPEKLKLHRATLPSITTTTSEN 73
>U64599-10|AAL11463.1| 424|Caenorhabditis elegans Regulator of g
protein signalingprotein 7, isoform c protein.
Length = 424
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 45 DAYLALQQSEMLANQTRN--DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTAGN 99
D Y + S+M T N D+ S + NG G P+ + +HR S T T+ N
Sbjct: 118 DYYRSTGSSDMRGRSTNNLLDYTSASS-STNGSAGGPEKLKLHRATLPSITTTTSEN 173
>U64599-9|AAL65791.1| 782|Caenorhabditis elegans Regulator of g
protein signalingprotein 7, isoform b protein.
Length = 782
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 45 DAYLALQQSEMLANQTRN--DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTAGN 99
D Y + S+M T N D+ S + NG G P+ + +HR S T T+ N
Sbjct: 476 DYYRSTGSSDMRGRSTNNLLDYTSASS-STNGSAGGPEKLKLHRATLPSITTTTSEN 531
>U64599-7|AAL11462.1| 819|Caenorhabditis elegans Regulator of g
protein signalingprotein 7, isoform a protein.
Length = 819
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 45 DAYLALQQSEMLANQTRN--DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTAGN 99
D Y + S+M T N D+ S + NG G P+ + +HR S T T+ N
Sbjct: 513 DYYRSTGSSDMRGRSTNNLLDYTSASS-STNGSAGGPEKLKLHRATLPSITTTTSEN 568
>AY569308-1|AAS75452.1| 819|Caenorhabditis elegans RGS-7A protein.
Length = 819
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 45 DAYLALQQSEMLANQTRN--DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTAGN 99
D Y + S+M T N D+ S + NG G P+ + +HR S T T+ N
Sbjct: 513 DYYRSTGSSDMRGRSTNNLLDYTSASS-STNGSAGGPEKLKLHRATLPSITTTTSEN 568
>AB080201-1|BAB85494.1| 782|Caenorhabditis elegans C2-RGS protein
protein.
Length = 782
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 45 DAYLALQQSEMLANQTRN--DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTAGN 99
D Y + S+M T N D+ S + NG G P+ + +HR S T T+ N
Sbjct: 476 DYYRSTGSSDMRGRSTNNLLDYTSASS-STNGSAGGPEKLKLHRATLPSITTTTSEN 531
>U29614-6|AAA68809.2| 378|Caenorhabditis elegans Hypothetical
protein F18E9.3 protein.
Length = 378
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 78 QPQPVYIHRGNYLSPTGN 95
QP+PV IH G Y PT N
Sbjct: 296 QPKPVVIHTGRYSGPTYN 313
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.137 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,694,716
Number of Sequences: 27539
Number of extensions: 326616
Number of successful extensions: 810
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 13
length of query: 318
length of database: 12,573,161
effective HSP length: 81
effective length of query: 237
effective length of database: 10,342,502
effective search space: 2451172974
effective search space used: 2451172974
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -