GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001173-TA|BGIBMGA001173-PA|IPR001604|DNA/RNA
non-specific endonuclease
         (318 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.6  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   4.6  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   4.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   8.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   8.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   8.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.1  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 171 FNAGNWNRLEQ--NLRRRIGQAGYHTMV 196
           ++ GN+  ++   NLRRR+G   +HT +
Sbjct: 195 YSTGNFTCIQIVFNLRRRLGYHLFHTYI 222


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 161 FINAAPQWQP 170
           F+NAAP W P
Sbjct: 22  FVNAAPDWVP 31


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 161 FINAAPQWQP 170
           F+NAAP W P
Sbjct: 22  FVNAAPDWVP 31


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 63  DFRSGCTFRVNGDLGQPQPVY 83
           DFR+  ++R+  +L  P P Y
Sbjct: 212 DFRNSRSWRITNNLFYPYPPY 232


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 84  IHRGNYLSPTG-NTAGNFFPGVAVNSAYTQVSQRN 117
           I+ GN+ SP+G N+ G+F  G   N   T  S +N
Sbjct: 58  INPGNF-SPSGPNSPGSFTAGCHSNLLSTSPSGQN 91


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 84  IHRGNYLSPTG-NTAGNFFPGVAVNSAYTQVSQRN 117
           I+ GN+ SP+G N+ G+F  G   N   T  S +N
Sbjct: 58  INPGNF-SPSGPNSPGSFTAGCHSNLLSTSPSGQN 91


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 261 EARNLQFCTDRCRNNNAFNWVG 282
           E   +     RC    AF+W+G
Sbjct: 353 EVAGVMRAVKRCNATGAFSWIG 374


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.137    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,197
Number of Sequences: 429
Number of extensions: 4194
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 7
length of query: 318
length of database: 140,377
effective HSP length: 58
effective length of query: 260
effective length of database: 115,495
effective search space: 30028700
effective search space used: 30028700
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 44 (21.8 bits)