GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001173-TA|BGIBMGA001173-PA|IPR001604|DNA/RNA
non-specific endonuclease
         (318 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54450.1 68414.m06211 calcium-binding EF-hand family protein ...    30   2.4  
At3g05860.1 68416.m00658 MADS-box protein (AGL45) similar to MAD...    29   3.1  
At4g07990.1 68417.m01280 DNAJ heat shock N-terminal domain-conta...    29   5.4  
At2g26160.1 68415.m03139 F-box family protein contains F-box dom...    29   5.4  
At3g27870.1 68416.m03475 haloacid dehalogenase-like hydrolase fa...    28   7.2  
At3g02030.1 68416.m00166 hydrolase, alpha/beta fold family prote...    28   7.2  
At1g51800.1 68414.m05837 leucine-rich repeat protein kinase, put...    28   9.5  

>At1g54450.1 68414.m06211 calcium-binding EF-hand family protein
          contains Pfam profile: PF00036 EF hand
          Length = 535

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 25 LPEPGQLAFVLNEDEFEDYLDAYLALQQSEMLANQTRNDFRSGCTFRV 72
          LPE   ++   N+D  +   D +LAL ++  L     ND ++G    V
Sbjct: 13 LPETSPMSMKSNQDFVKKLFDQWLALPETNRLVTSLVNDAKAGVALNV 60


>At3g05860.1 68416.m00658 MADS-box protein (AGL45) similar to
           MADS-box protein; PMID: 12837945; contains Pfam profile
           PF00319: SRF-type transcription factor (DNA-binding and
           dimerisation domain)
          Length = 260

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 169 QPFNAGNWNRLEQNLRRRIGQAGYHTMVYTGTFRVTQLRNQNNRLVD 215
           +P    N+N L  N  +   Q GY  +V  G +  +Q++NQ+   +D
Sbjct: 189 RPNQNPNFNHLSHNQYQYQQQFGYPILVQDGIYNPSQIQNQHEEWLD 235


>At4g07990.1 68417.m01280 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI5 DnaJ
           homolog subfamily B member 10 Mus musculus ; contains
           Pfam profile PF00226 DnaJ domain
          Length = 347

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 37  EDEFEDYLDAYLALQQSEMLANQTRNDFRSGCTFRVNGDLGQPQ 80
           ++E+ED L+    +++ + + N+ RN FR G       D G  Q
Sbjct: 201 QEEYEDELERVARIRRMQSVFNRERNKFRRGYENWTENDPGAQQ 244


>At2g26160.1 68415.m03139 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 359

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 204 TQLRNQNNRLVDIFLHRASNGALQIPVPLYFYKVVHDSSRRLGTAFISINNPYYTQAEAR 263
           T+++NQ    +DI LH+    AL +   +++  +   S  +  T  I ++   Y     R
Sbjct: 182 TKIKNQVEDFLDIILHKGQVYALDLTGAIWWISLSPLSLLQF-TPSIPMDYDGYDSCNKR 240

Query: 264 NLQFCTDRC 272
            +++C D C
Sbjct: 241 LVEYCGDLC 249


>At3g27870.1 68416.m03475 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P98200, Homo sapiens SP|O43520,
           {Arabidopsis thaliana} SP|P98204; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1174

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 75  DLGQPQPVYI-HRGNYLSPTGNTAGNFFP 102
           D   P+ + + +RGNY+S T  TA NF P
Sbjct: 44  DPDNPEALQLNYRGNYVSTTKYTAANFIP 72


>At3g02030.1 68416.m00166 hydrolase, alpha/beta fold family protein
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family; contains non-consensus splice site (GC) at
           intron 10
          Length = 565

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 92  PTGNTAGNFFPGVAVNSAYTQVSQRNMIAGFVGNALADRYVTST 135
           P   TA N F  + + S  T V   NM+       LAD +   T
Sbjct: 238 PETETAANIFQDLVITSTLTSVVLSNMVKNLTMQILADTFRRET 281


>At1g51800.1 68414.m05837 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 894

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 125 NALADRYVTSTQFLAR-GHLAA--KTDFIYATGQRASFYFINAAPQ-WQPFNAGNWNRLE 180
           +AL  R + +T +L R G L    + D + AT  +   Y I+   + W P+N GNW+++ 
Sbjct: 170 SALELRKLMNTTYLTRQGSLQTFIRAD-VGATVNQGYRYGIDVFDRVWTPYNFGNWSQIS 228

Query: 181 QN 182
            N
Sbjct: 229 TN 230


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.137    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,192,367
Number of Sequences: 28952
Number of extensions: 297297
Number of successful extensions: 674
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 7
length of query: 318
length of database: 12,070,560
effective HSP length: 81
effective length of query: 237
effective length of database: 9,725,448
effective search space: 2304931176
effective search space used: 2304931176
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 59 (27.9 bits)