Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001172-TA|BGIBMGA001172-PA|IPR001206|Diacylglycerol
kinase, catalytic region, IPR002219|Protein kinase C, phorbol
ester/diacylglycerol binding
         (269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    29   0.53 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    29   0.70 
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    25   8.7  

>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 13/84 (15%)

Query: 19  MDRVQFTCKPTFRDVGVRQYREQTVTH--HHWVHRRSEKGKCKACGKSLQAKLSFSSKEI 76
           +D ++F   P +R   V + + Q+V +    +    SE  +C  CG+S  A+        
Sbjct: 85  VDVLEFVKGPWYRAYPVEE-KTQSVANAGEPFEDEGSETCRCVICGRSDHAE-------- 135

Query: 77  VALSCSWCKDAYHNKESCFNLQRI 100
           V L C  C DAYH    C N+  +
Sbjct: 136 VLLLCDGCDDAYHT--YCLNMDAV 157


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 2   KCSACKIIAHTACIDILMDRVQFTCKPTFRDVG---------VRQYREQTVTHHHWVHRR 52
           KC+ C I AH  C+ ++ D    + +   R +           +Q+++++  H H  H++
Sbjct: 503 KCTECGITAHAQCVHLVPDFCGMSMEMANRVISEIRTTKIYKAQQHKQKSSHHKHHHHKK 562

Query: 53  SEKGKCK 59
           S+    K
Sbjct: 563 SKSSSSK 569


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 14/83 (16%)

Query: 193 LNPRQVFDLTQGGPGPGL-------ELFRKVPNLRVLACGGDGTVGWVLSVLDRIGSRPA 245
           LN  + F +  GG GPG+        L   +P+  V++CGG   +  V S     GS   
Sbjct: 765 LNLHKTFCIPHGGGGPGVGPICVKKHLADFLPSHPVVSCGGKNGITSVSS--SPFGS--- 819

Query: 246 VGVLPLGTGNDLARALGWGGATD 268
            G+LP+       R +G  G  D
Sbjct: 820 AGILPISWA--YMRMMGLAGLRD 840


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,142,814
Number of Sequences: 5004
Number of extensions: 43536
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 3
length of query: 269
length of database: 2,362,478
effective HSP length: 72
effective length of query: 197
effective length of database: 2,002,190
effective search space: 394431430
effective search space used: 394431430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)