Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001171-TA|BGIBMGA001171-PA|undefined
         (227 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY393685-1|AAR02558.1|  150|Homo sapiens immunoglobulin heavy ch...    33   1.1  

>AY393685-1|AAR02558.1|  150|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 150

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 96  FVEPTGSSLENVRASEEGVASAARDSLVHDIYLAVPELKRDRAASVDSCFSKVSGGARAE 155
           ++ P     ++ +  + G A+  RD+ V  +Y+ +  L+ D  A V  C  KV G +R  
Sbjct: 46  YINPNNGGTDSAQKFQ-GRATMTRDTSVSSVYMELRRLRSDDMA-VYYCAGKVVGTSRPF 103

Query: 156 QLNGSANSLTVPGTGLRSRSVDIVLPTAEQSRYKALAL 193
              G    +TV     +  SV  + P+++ +     AL
Sbjct: 104 DHWGQGTLVTVSTASTKGPSVFPLAPSSKSTSGGTAAL 141


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.314    0.129    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,170,873
Number of Sequences: 224733
Number of extensions: 660363
Number of successful extensions: 1718
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1718
Number of HSP's gapped (non-prelim): 1
length of query: 227
length of database: 73,234,838
effective HSP length: 87
effective length of query: 140
effective length of database: 53,683,067
effective search space: 7515629380
effective search space used: 7515629380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)