Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001171-TA|BGIBMGA001171-PA|undefined
(227 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.11
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 28 1.3
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 3.0
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 3.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 3.0
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 5.2
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 26 5.2
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 26 5.2
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.9
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 6.9
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 6.9
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 31.5 bits (68), Expect = 0.11
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 117 AARDSLVHDIYLAVPELKRDRAASVDSCFSKVSGGARAEQLNGSANSLTVPGTGLRSRSV 176
+A D+LV + +A P K A+SV++ FS A +E LNGS + VP +GL ++
Sbjct: 43 SAYDNLVKNGMIA-PRRKNSFASSVNNPFST---SALSEALNGSVSMSHVPSSGLLKSTL 98
Query: 177 DIVLPTA 183
PTA
Sbjct: 99 SST-PTA 104
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 165 TVPGTGLRSRSVDIVLPTA 183
TVP TG RS SV +V PTA
Sbjct: 1102 TVPATGTRSGSVIVVSPTA 1120
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 136 DRAASVDSCFSKVSGGARAEQLNGSAN-SLTVPGTGLRSRSVDIVLPTA 183
D +AS+ S +G ++GS + T P +G S +V++V PTA
Sbjct: 197 DTSASLSKTTSPTAGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTA 245
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 165 TVPGTGLRSRSVDIVLPTA 183
T+P G S +V+IV+PTA
Sbjct: 1067 TIPAQGTTSGTVEIVVPTA 1085
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 74 PPSDEPPIL--PQRRRSISRQEAFFVEPTGSSLEN 106
PPS PP+L P R+ S Q+ + + P+ S+ +N
Sbjct: 226 PPSPPPPVLHSPPRKVSAQEQQDWQIPPSISNWKN 260
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 3.0
Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
Query: 72 LQPPSDEPPILPQRRRSISRQEAFFVEPTGSSLENVRASEEGVASAARDSLVHDIYLAVP 131
L PP+ P P+ R Q + + LEN + E A R S+ L
Sbjct: 100 LSPPAT--PATPRSRIEGESQTSAIPQTDRLILENHQQEFERAARRFRSSIAALRNLNTQ 157
Query: 132 ELKRDRAASVDSCFSKVSGGARAEQLNGSANSLTVPGTGLRSRSVDIVLPTAEQS 186
+ A++ + SGG + +GS N+L PGT + V V A+ +
Sbjct: 158 NNQSTLASNHEDENVSSSGGQEMQD-HGSVNNLESPGTAIGRLPVRSVTSLADSN 211
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 92 QEAFFVEPTGSSLENVRASEEGVASAARDSLVHDIYLAVPELK 134
QEA + SS V E VAS A DSLV ++ ++ P+L+
Sbjct: 880 QEAILSQDISSSPSPVLPPSENVASYADDSLVSNLTMS-PKLR 921
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 72 LQPPSDEPPILPQRRRSIS 90
LQPPS +PP P +R S
Sbjct: 69 LQPPSSQPPAPPTHQREAS 87
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 106 NVRASEEGVASAARDSLVHDIYLAVPE 132
N +AS + + AA+ + +HDI + PE
Sbjct: 541 NPKASNDEIVEAAKKAKIHDIIESFPE 567
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 133 LKRDRAASVDSCFSKVSGGARAEQLNGSAN 162
++ D +A++D+ F K++ QLNGS +
Sbjct: 245 IQSDSSATIDNHFGKLNEALSLSQLNGSCS 274
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 157 LNGSAN-SLTVPGTGLRSRSVDIVLPTA 183
++GS + T+P G+ S +V+IV PTA
Sbjct: 97 ISGSTEYTTTIPAEGITSGTVEIVEPTA 124
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 165 TVPGTGLRSRSVDIVLPTA 183
T P +G R+ +V++V+PTA
Sbjct: 354 TYPASGTRTGTVEVVIPTA 372
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 157 LNGSAN-SLTVPGTGLRSRSVDIVLPTA 183
++GS + T+P G+ S +V+IV PTA
Sbjct: 97 ISGSTEYTTTIPAEGITSGTVEIVEPTA 124
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.129 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,486
Number of Sequences: 5004
Number of extensions: 18321
Number of successful extensions: 82
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 40
length of query: 227
length of database: 2,362,478
effective HSP length: 70
effective length of query: 157
effective length of database: 2,012,198
effective search space: 315915086
effective search space used: 315915086
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)
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