GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001171-TA|BGIBMGA001171-PA|undefined
         (227 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029           29   4.1  
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146...    29   4.1  
10_07_0059 + 12475452-12475785,12475889-12476523                       27   9.4  

>08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029
          Length = 927

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 86  RRSISRQEAFFVEPTGSSLENVRASEEGVASAARDSLVHDIYLAVPELKRDRAASVDSCF 145
           R ++S   AFF  P  + L  +     G++  A  +L +  YL    LK DR       F
Sbjct: 762 RGAMSSLPAFFTSPE-NQLRELHLWSTGLSGEALSALQNLPYLVYLTLKEDRRGFWSDTF 820

Query: 146 SKVSGG 151
           +  SGG
Sbjct: 821 AVQSGG 826


>02_01_0224 -
           1461924-1462227,1462602-1462798,1463059-1463213,
           1464101-1464207,1464289-1464375,1465332-1465414,
           1465959-1466027,1466332-1466658,1466744-1466957,
           1467170-1467267,1467516-1467554,1467672-1468160
          Length = 722

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 102 SSLENVRASEEGVASAARDSLVHDIYLAVPELKRDRAASVDSCFSKVSGGARAEQLNGSA 161
           + ++++R +  G A+    S+  DI  +V         + DSC +      RAE LNG  
Sbjct: 199 AEIQSLRRANVGSANKYAGSMAMDIDQSVHAPANGALHTGDSCLASTR---RAETLNGRN 255

Query: 162 NSLTVPGTGL 171
             L+ P  GL
Sbjct: 256 KELSSPQDGL 265


>10_07_0059 + 12475452-12475785,12475889-12476523
          Length = 322

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/43 (30%), Positives = 16/43 (37%)

Query: 72  LQPPSDEPPILPQRRRSISRQEAFFVEPTGSSLENVRASEEGV 114
           L PP   PP++P  R    R       P G     +R    GV
Sbjct: 99  LPPPPPPPPVIPHERHGARRFRGVRKRPWGKWAAEIRDPVRGV 141


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.129    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,389,146
Number of Sequences: 37544
Number of extensions: 147348
Number of successful extensions: 357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 3
length of query: 227
length of database: 14,793,348
effective HSP length: 80
effective length of query: 147
effective length of database: 11,789,828
effective search space: 1733104716
effective search space used: 1733104716
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)