GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001171-TA|BGIBMGA001171-PA|undefined
         (227 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-36|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical...    28   4.8  
AL132876-35|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical...    28   4.8  
AL132858-11|CAH04763.1|  133|Caenorhabditis elegans Hypothetical...    27   8.4  

>AL132876-36|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
           protein Y105E8A.26b protein.
          Length = 1133

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 85  RRRSISRQEAFFVEPTGSSLENVRASEEGVASAARDSLVHDIYLAVPELKRDRAASVDSC 144
           R RS    E     P  S L N      G+AS+   +  +D Y   P    D     +  
Sbjct: 272 RHRSDGSVERRVSSPANSQLSNFN----GMASSQITTQDYDCYTRQPSRSIDANGVANIM 327

Query: 145 FSKVSGGARAEQLNGSANSLTVPG 168
           F KV GG     + GS     + G
Sbjct: 328 FRKVRGGGGGGGVGGSVGVRVIGG 351


>AL132876-35|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
           protein Y105E8A.26a protein.
          Length = 1172

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 85  RRRSISRQEAFFVEPTGSSLENVRASEEGVASAARDSLVHDIYLAVPELKRDRAASVDSC 144
           R RS    E     P  S L N      G+AS+   +  +D Y   P    D     +  
Sbjct: 272 RHRSDGSVERRVSSPANSQLSNFN----GMASSQITTQDYDCYTRQPSRSIDANGVANIM 327

Query: 145 FSKVSGGARAEQLNGSANSLTVPG 168
           F KV GG     + GS     + G
Sbjct: 328 FRKVRGGGGGGGVGGSVGVRVIGG 351


>AL132858-11|CAH04763.1|  133|Caenorhabditis elegans Hypothetical
           protein Y113G7A.12 protein.
          Length = 133

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 4/38 (10%)

Query: 106 NVRASEEGVASAARDSLVHDIYLAVPELKRDRAASVDS 143
           NVRAS    +S++R+S++HD+  +V + +  RA+S  S
Sbjct: 71  NVRAS----SSSSRESVMHDLQSSVQQSRNVRASSSSS 104


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.129    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,231
Number of Sequences: 27539
Number of extensions: 104842
Number of successful extensions: 221
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 3
length of query: 227
length of database: 12,573,161
effective HSP length: 79
effective length of query: 148
effective length of database: 10,397,580
effective search space: 1538841840
effective search space used: 1538841840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)