GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001171-TA|BGIBMGA001171-PA|undefined
         (227 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family...    29   2.6  
At4g28630.1 68417.m04093 ABC transporter family protein identica...    27   7.9  
At4g14920.1 68417.m02292 PHD finger transcription factor, putative     27   7.9  

>At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family
           protein
          Length = 571

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 75  PSDEPPILPQRRRSISRQEAFFVEPTGSSLENVRASEEGVASAARDSLVHDIYLAVPELK 134
           P+ E P+     RS +R  A  V+    +  + R SE+ VAS+A+  L  D   + P  +
Sbjct: 40  PTPEKPLENMLSRSRNRSVALSVKEIRQAAGSRRRSEDPVASSAKSRLFFDSSSSSPSKR 99

Query: 135 R 135
           +
Sbjct: 100 K 100


>At4g28630.1 68417.m04093 ABC transporter family protein identical
           to half-molecule ABC transporter ATM1 GI:9964117 from
           [Arabidopsis thaliana]
          Length = 678

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 106 NVRASEEGVASAARDSLVHDIYLAVPE 132
           N+ A+EE V  AAR +++HD  +  P+
Sbjct: 535 NLSATEEEVYDAARRAVIHDTIMKFPD 561


>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
          Length = 1055

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/16 (75%), Positives = 14/16 (87%)

Query: 112 EGVASAARDSLVHDIY 127
           E V+SA+RDSLVHD Y
Sbjct: 955 EDVSSASRDSLVHDGY 970


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.129    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,512
Number of Sequences: 28952
Number of extensions: 101383
Number of successful extensions: 214
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 3
length of query: 227
length of database: 12,070,560
effective HSP length: 79
effective length of query: 148
effective length of database: 9,783,352
effective search space: 1447936096
effective search space used: 1447936096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)