Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001170-TA|BGIBMGA001170-PA|undefined
         (115 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   1.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   3.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   3.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   3.1  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   7.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   7.1  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 44  PQQASIAASTGPSQPTHCASWSYGTHLHCLIAQHSSSVST 83
           PQ A   +ST  S PT   S S  T+    +    SSV T
Sbjct: 71  PQGAPSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPT 110


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 42  VVPQQASIAASTGPSQPTHCASWSYG 67
           V+P   + A+S G   P H +S+  G
Sbjct: 106 VLPGNYANASSVGSRNPIHTSSYMTG 131


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 42  VVPQQASIAASTGPSQPTHCASWSYG 67
           V+P   + A+S G   P H +S+  G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 42  VVPQQASIAASTGPSQPTHCASWSYG 67
           V+P   + A+S G   P H +S+  G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 19  TAHQELRLPQSPRILADKSTSLTVV 43
           T HQ L+     R+L+++ T  T++
Sbjct: 672 TDHQALKFLSRCRLLSERLTRWTLI 696


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 15  DVQGTAHQELRLPQSPRILADKSTSLTVVPQQAS 48
           D QG  H++  LP +   +A  +    V+  +A+
Sbjct: 629 DRQGLLHRQFNLPPAKDTIAVPNNGYVVLRLRAN 662


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.121    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,913
Number of Sequences: 317
Number of extensions: 961
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 114,650
effective HSP length: 49
effective length of query: 66
effective length of database: 99,117
effective search space:  6541722
effective search space used:  6541722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.4 bits)
S2: 38 (19.4 bits)