Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001170-TA|BGIBMGA001170-PA|undefined
(115 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7934| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.17
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 31 0.31
SB_25158| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_37755| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_57069| Best HMM Match : GETHR (HMM E-Value=1.7e-10) 28 2.2
SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 27 2.8
SB_22129| Best HMM Match : Homeobox (HMM E-Value=4.6e-26) 27 3.8
SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85) 27 5.0
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94) 26 6.6
SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06) 26 6.6
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 26 6.6
SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
>SB_7934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 31.5 bits (68), Expect = 0.17
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 56 SQPTHCASWSYGTHLHCLIAQ-HSSSVSTHRRLRAALATITQHSSSVS 102
S T S+S TH HC +AQ +S+S +H + + +T T +V+
Sbjct: 64 SHGTVAQSYSPSTHFHCTVAQSYSTSTHSHGTVAQSYSTSTHSHGTVA 111
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 56 SQPTHCASWSYGTHLHCLIAQHSSSVSTHRR 86
S T S+S TH H +AQ S S STH R
Sbjct: 92 SHGTVAQSYSTSTHSHGTVAQ-SYSTSTHSR 121
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 30.7 bits (66), Expect = 0.31
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 44 PQQASIAASTGPSQPTHCAS 63
PQQAS+ S G SQP CA+
Sbjct: 569 PQQASVGTSMGQSQPAQCAT 588
Score = 29.5 bits (63), Expect = 0.71
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 17 QGTAHQELRLPQSPRILADKS-TSLTVVPQQASIAASTGPSQPTH 60
Q HQ + Q A +S T PQ AS+ S G SQPTH
Sbjct: 520 QAQQHQLVSQQQQMLSPAQQSPTHAPAGPQHASVGTSMGQSQPTH 564
>SB_25158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 78 SSSVSTHRRLRAALATITQHSSSVSTHRKLR 108
SSS ST+ ++ A +T+ SSS STHR++R
Sbjct: 449 SSSKSTNAQVTAG-STVRDSSSSGSTHRRIR 478
>SB_37755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 44 PQQASIAASTGPSQPT-HCASWSYGTHLHCLIAQHS 78
PQ+ ++ P +P CASWS + CL+ S
Sbjct: 96 PQEVIFESTHPPGEPVASCASWSLSRNRACLVGYES 131
>SB_57069| Best HMM Match : GETHR (HMM E-Value=1.7e-10)
Length = 547
Score = 27.9 bits (59), Expect = 2.2
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 33 LADKSTSLTVVPQQASIAASTGPSQPTHCA-SWSYGTHLHCLIAQHSSSVSTHRRLRAAL 91
L KS T++ + +A + S+ TH S TH A+ S S STH R +
Sbjct: 157 LVSKSCD-TLIQKLGEVADTESLSESTHARESLKESTH-----ARESLSESTHARESLSE 210
Query: 92 ATITQHSSSVSTHRK 106
+T + S S STH +
Sbjct: 211 STHARESLSESTHAR 225
>SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.5 bits (58), Expect = 2.8
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 37 STSLTVVPQQASIAASTGPSQPTHCASWS-YGTHLHC--LIAQHSSSVSTHRRLRAALAT 93
S+S +V +Q ++ A+ T +W Y + C ++ +HSS + R+ +A T
Sbjct: 6 SSSNGIVRKQQAMRANYNQ---TLVINWDLYVNNKQCAQMMIKHSSPIGIVRKQQAMRET 62
Query: 94 ITQHSSSVSTHRKLRAALA 112
I +H+SS RK +A A
Sbjct: 63 IIKHASSNGIVRKQQAMRA 81
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 42 VVPQQASIAASTGPSQPTHCASWSYGTHLHCLIAQHSSSVSTHRR 86
V P +SI +S+ S P+ S S HLHC H +S H R
Sbjct: 204 VFPFISSIFSSSSLSPPSSLQSSSPSRHLHC----HRPRLSNHHR 244
>SB_22129| Best HMM Match : Homeobox (HMM E-Value=4.6e-26)
Length = 366
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 52 STGPSQPTHCASWSYGTHLHCLIAQHSSSVSTH 84
+TG +QP + Y T + L HSS+VS H
Sbjct: 325 TTGKNQPQQMIPYDYETAEYPLPVTHSSAVSYH 357
>SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85)
Length = 203
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 66 YGTHLHCLIAQHSSSVSTHRRLRAALATITQHSSSVST 103
Y TH HC + H+ +V H L AL HS +T
Sbjct: 168 YMTHSHCCVTCHTRTVVLHDTL--ALLCYMSHSHCCAT 203
>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
Length = 450
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 17 QGTAHQELRLPQSPRILADKSTSLTVVPQQASIAASTGPSQP 58
+G +H R+P SPR ++ + V P+Q S + P P
Sbjct: 264 RGRSHSPRRVPVSPRQRSNSPRRVPVSPRQRSNSPRRVPVSP 305
>SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1074
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 22 QELRLPQSPRILADKST-SLTVVPQQASIAASTGPSQPTH 60
Q + QSP ++ + S T+VPQ+AS+A T P+ H
Sbjct: 310 QSIDTEQSPIVITSVTPPSTTMVPQKASVA--TSPTTTVH 347
>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
Length = 2009
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/59 (27%), Positives = 22/59 (37%)
Query: 21 HQELRLPQSPRILADKSTSLTVVPQQASIAASTGPSQPTHCASWSYGTHLHCLIAQHSS 79
H+ L LP +P A + A P P H AS Y T I +H++
Sbjct: 1044 HRALHLPHTPARAASTPYATACCIYPIRHRALHLPHTPPHAASTPYATACRIFIIRHNA 1102
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 26.2 bits (55), Expect = 6.6
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 24 LRLPQSPRILADKSTSLTVVPQQASIAASTGPSQPTHC------ASWSYGTH-LHCLIAQ 76
+R S L+++S+S + PQ +S A + PT ++ +Y H + +
Sbjct: 289 MRRTASTLPLSNQSSSTSTTPQPSSPATPSSRDHPTRGMLSTRESALTYSKQGFHFMPST 348
Query: 77 HSSSVSTHRRLRAALATITQHSS-SVSTH 104
S V+T R +++TQ SS + STH
Sbjct: 349 QESPVTTFGRDSTQASSVTQGSSFTSSTH 377
>SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 926
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 57 QPTHCASWSYGTHLHCLIAQHSSSVSTHRRLRAALATITQHSSSVSTHRKL 107
Q T C + C + H S T+ LR A+ T+ SS+ S L
Sbjct: 335 QNTLCNMATVAVQNLCFLRHHLHSKVTYSMLRCAIVTVRAASSAASQKSNL 385
>SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 688
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 20 AHQELRLPQSPRILADKSTSLTVVPQQASIAASTGPSQP 58
A ++ LP S +L K+ S VV + AAS PS+P
Sbjct: 101 APSKVTLPASTVVLPVKTLSSPVVTTAVASAASLKPSKP 139
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.121 0.342
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,515,615
Number of Sequences: 59808
Number of extensions: 114538
Number of successful extensions: 488
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 51
length of query: 115
length of database: 16,821,457
effective HSP length: 73
effective length of query: 42
effective length of database: 12,455,473
effective search space: 523129866
effective search space used: 523129866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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