GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001170-TA|BGIBMGA001170-PA|undefined
         (115 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.43 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   0.57 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   2.3  
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    25   3.0  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   3.0  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   3.0  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   3.0  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    24   5.3  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    24   5.3  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    24   7.0  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    24   7.0  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 0.43
 Identities = 19/70 (27%), Positives = 34/70 (48%)

Query: 34  ADKSTSLTVVPQQASIAASTGPSQPTHCASWSYGTHLHCLIAQHSSSVSTHRRLRAALAT 93
           A  STS + +   + +++S+ PS  +     S       + +  SSS ST   L ++ ++
Sbjct: 201 APTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSS 260

Query: 94  ITQHSSSVST 103
            T  SSS S+
Sbjct: 261 STASSSSSSS 270



 Score = 26.6 bits (56), Expect = 0.99
 Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 29  SPRILADKSTSLTVVPQQASIAASTGPSQPTHCASWSYGTHLHCLIAQHSSSVSTHRRLR 88
           SP   +   +S +  P  +S +++T  S+    +S S+ + +    +  SS++++     
Sbjct: 335 SPTSSSSTISSSSSSPSSSSFSSTTSSSK----SSSSFSSTVSSSSSTSSSTLTSSSSSS 390

Query: 89  AALATITQHSSSVSTHR 105
           +  A+ + HSSS+S+H+
Sbjct: 391 SRPASSSSHSSSLSSHK 407


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 0.57
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 37  STSLTVVPQQASIAASTGPSQPTHCASW----SYGTHLHCL-IAQHSSSVSTHRRLRAAL 91
           STS +     +S ++S+  S+P+  +S+    S  T +  + +   SSS ST   + ++ 
Sbjct: 213 STSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSST 272

Query: 92  ATITQHSSSVSTHRKLRA 109
           A +  ++S  S H  L A
Sbjct: 273 AALALNASKASNHTSLNA 290



 Score = 25.0 bits (52), Expect = 3.0
 Identities = 18/75 (24%), Positives = 35/75 (46%)

Query: 29  SPRILADKSTSLTVVPQQASIAASTGPSQPTHCASWSYGTHLHCLIAQHSSSVSTHRRLR 88
           S  + +  S+S +  P  +S   +T PS  +  +S S  +      +  SSS S+     
Sbjct: 129 SSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188

Query: 89  AALATITQHSSSVST 103
           ++ ++ +  SSS S+
Sbjct: 189 SSSSSSSSSSSSSSS 203


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 47  ASIAASTGPSQPTHCASWSYGTHLHCLIAQHSSSVSTHRRLRAALATITQHSSSVST 103
           +S+AAS  P+  +  +SWS  + +    A  ++  ST     +++AT +   SS S+
Sbjct: 939 SSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSST-----SSIATASVSGSSTSS 990


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 30  PRILADKSTSLTVVPQQASIAASTGPSQPTHCAS 63
           P +  DK+     VP +A++  + G S+P   AS
Sbjct: 67  PLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 75  AQHSSSVSTHRRLRAALATITQHSSSVSTHRKLRAALALA 114
           A  +S++S H + + ALA  TQ  S  S H++   A ALA
Sbjct: 37  ALENSNISEHWKQQIALA--TQSRSFSSPHQRAHNAAALA 74


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 37  STSLTVVPQQASIAASTGPSQPTHC---ASWSYGTHLHCLIAQHSSSVSTHRRLRAALAT 93
           S  L  +P +A     +G  QP      ++  +  +   L++    SVST        AT
Sbjct: 362 SFPLPTMPSEAKGFIESGAGQPLGFNAPSNQEFSANATALVSPGPHSVSTTINTNIVQAT 421

Query: 94  ITQHSSSVSTHRKLRAALALAS 115
           I+Q S+S S+     A+   +S
Sbjct: 422 ISQSSTSGSSSGSSSASTTASS 443


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 15  DVQGTAH-QELRLPQSPRILADKSTS---LTVVPQQASIAASTGPSQ 57
           D+   AH  +   P+ PR+ +   TS   L V PQ  S   S+ PSQ
Sbjct: 531 DITVNAHPNQPSRPRLPRVASPLKTSPVKLAVTPQAPSPLPSSNPSQ 577


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 8   MYKASADDVQGTAHQELRLPQSPRILADKSTSLTVVPQQAS 48
           +YKA+   VQ      LR P+  RI  DKS       +Q S
Sbjct: 705 VYKAAIGYVQEDKGISLRFPRFIRIREDKSWEDATTSEQVS 745


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 19  TAHQELRLPQSPRILADKSTSLT 41
           T +Q L+LPQSP ++A +    T
Sbjct: 696 TPYQYLKLPQSPSLIAKEPPQRT 718


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 55  PSQPTHCASWS 65
           PSQP HC  W+
Sbjct: 187 PSQPIHCVVWA 197


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 10  KASADDVQGTAHQELRLPQSPRILADKSTSLTVVPQQASIA 50
           K+    V G A  +  + +SP I  ++ST  T   QQ+ IA
Sbjct: 662 KSCLQSVAGVALSQSPIGESPIIDVEQSTQETTFWQQSCIA 702


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.121    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 450,227
Number of Sequences: 5004
Number of extensions: 14487
Number of successful extensions: 53
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 18
length of query: 115
length of database: 2,362,478
effective HSP length: 64
effective length of query: 51
effective length of database: 2,042,222
effective search space: 104153322
effective search space used: 104153322
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)