GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001170-TA|BGIBMGA001170-PA|undefined
         (115 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   1.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   6.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   6.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   8.4  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 46  QASIAASTGPSQPTHCASWSYGTHLH 71
           Q S+A++TG S+  +C   SY    H
Sbjct: 78  QPSVASTTGFSKECYCCRESYLKERH 103


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 46  QASIAASTGPSQPTHCASWSYGTHLH 71
           Q S+A++TG S+  +C   SY    H
Sbjct: 78  QPSVASTTGFSKECYCCRESYLKERH 103


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 10  KASADDVQGTAHQELRLPQSPRILADKSTSLTVVPQQASIAASTGPSQPTHCASWS 65
           ++  D  Q +A  EL+L  +P +L       T+ P  A     +    PT   +W+
Sbjct: 403 RSEGDTAQASA--ELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVTWA 456


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 10  KASADDVQGTAHQELRLPQSPRILADKSTSLTVVPQQASIAASTGPSQPTHCASWS 65
           ++  D  Q +A  EL+L  +P +L       T+ P  A     +    PT   +W+
Sbjct: 403 RSEGDTAQASA--ELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVTWA 456


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 18  GTAHQELRLPQSPRILADKSTSLTVVPQQAS 48
           GT   E RLP  P     K  S+ ++P+  S
Sbjct: 629 GTQETEERLPPLPPKRIRKMPSMPLLPRPIS 659


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 60  HCASWSYGTH 69
           H ASWS+G++
Sbjct: 176 HIASWSHGSN 185


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 44 PQQASIAASTGPSQPTHCASWSY 66
          PQ +  +AST P+  T  + + Y
Sbjct: 69 PQHSGSSASTSPAARTTSSMYPY 91


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 29  SPRILADKSTSLTVVPQQASIAASTGPSQ 57
           +PRI +  S+S +  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.121    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,148
Number of Sequences: 429
Number of extensions: 1007
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 115
length of database: 140,377
effective HSP length: 50
effective length of query: 65
effective length of database: 118,927
effective search space:  7730255
effective search space used:  7730255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)