GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001170-TA|BGIBMGA001170-PA|undefined
         (115 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38560.1 68418.m04662 protein kinase family protein contains ...    30   0.44 
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ...    30   0.44 
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ...    28   1.3  
At3g04590.2 68416.m00489 DNA-binding family protein contains a A...    26   5.4  
At3g04590.1 68416.m00488 DNA-binding family protein contains a A...    26   5.4  
At3g19420.1 68416.m02463 expressed protein                             25   9.4  
At1g70700.1 68414.m08150 expressed protein                             25   9.4  

>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 27  PQSPRILADKSTSLTVVPQQASIAASTGPS 56
           P  P  LA   T L VVP++  IA  TGP+
Sbjct: 186 PTDPSTLAPPPTPLPVVPREKPIAKPTGPA 215


>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 674

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 14/33 (42%), Positives = 24/33 (72%)

Query: 77  HSSSVSTHRRLRAALATITQHSSSVSTHRKLRA 109
           +SS+ S+ +RLR+ ++T TQ+SS     RK+R+
Sbjct: 235 NSSTESSLKRLRSVVSTSTQNSSDPDPARKIRS 267


>At2g07360.1 68415.m00843 SH3 domain-containing protein contains
           Pfam profile PF00018: SH3 domain
          Length = 1196

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 37  STSLTVVPQQA-SIAASTGPSQPTHCASWSYGTHLHCLIAQHSSSVSTHRRLRAALATIT 95
           S   T VP Q+ S +AS+  SQPT  AS S  +HLH  ++   +++   +  RA L  I 
Sbjct: 14  SADPTPVPAQSTSSSASSTASQPTS-ASASSSSHLHHPMST-KTTLGEKKSKRATLMQIQ 71

Query: 96  QHSSSVS 102
             + SV+
Sbjct: 72  NDTISVA 78


>At3g04590.2 68416.m00489 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 411

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 27  PQSPRILADKSTSLTVVPQQASIAASTGPSQPT---HCASWSYGTHLHCLIAQH--SSSV 81
           PQ      D S+SL V P     +A T P +P          Y T    L A+   SS+ 
Sbjct: 72  PQPQHQPNDGSSSLAVYPHSVPSSAVTAPMEPVKRKRGRPRKYVTPEQALAAKKLASSAS 131

Query: 82  STHRRLRAALATITQHSSSVSTH 104
           S+  + R  LA +T    +VST+
Sbjct: 132 SSSAKQRRELAAVT--GGTVSTN 152


>At3g04590.1 68416.m00488 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 308

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 27  PQSPRILADKSTSLTVVPQQASIAASTGPSQPT---HCASWSYGTHLHCLIAQH--SSSV 81
           PQ      D S+SL V P     +A T P +P          Y T    L A+   SS+ 
Sbjct: 72  PQPQHQPNDGSSSLAVYPHSVPSSAVTAPMEPVKRKRGRPRKYVTPEQALAAKKLASSAS 131

Query: 82  STHRRLRAALATITQHSSSVSTH 104
           S+  + R  LA +T    +VST+
Sbjct: 132 SSSAKQRRELAAVT--GGTVSTN 152


>At3g19420.1 68416.m02463 expressed protein
          Length = 611

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 12  SADDVQGTAHQELRLPQSPRILADKSTSLTVVPQQASIAASTGPSQPTHCASWSYG 67
           S    + T+    + P++ +  AD++  LT   ++ SI+ + G SQP    + S G
Sbjct: 515 STGPTKTTSSASSQTPEAKKS-ADETAVLTKATEKVSISGNKGSSQPVQGVTVSKG 569


>At1g70700.1 68414.m08150 expressed protein
          Length = 238

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 49  IAASTGPSQPTHCASWSYGTHLHCLIAQHSSSVSTH 84
           +   TG S+P   A   YG  +H   A  SSS +TH
Sbjct: 150 LKGETGDSKPVREAERMYGKQIHNTAATSSSS-ATH 184


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.121    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,542
Number of Sequences: 28952
Number of extensions: 76303
Number of successful extensions: 218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 7
length of query: 115
length of database: 12,070,560
effective HSP length: 72
effective length of query: 43
effective length of database: 9,986,016
effective search space: 429398688
effective search space used: 429398688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)