Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001169-TA|BGIBMGA001169-PA|undefined
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    31   0.25 
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   3.1  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   5.4  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    26   7.1  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   7.1  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   9.4  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 279 NNVFLAISSYSWVTLPLSTSNVVLAALCPIPCPQFLDIACGFTAAVNIYMYIFGVIKS 336
           N  F+AI +         T+  V ++LC  PCP +  + CG     ++Y+   GV+++
Sbjct: 68  NIAFVAIRNNQCYCGSTLTATEVSSSLCTTPCPGYGSLMCGGDLYWSVYLTGNGVLQT 125


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)

Query: 274 EIPLVNNVFLAISSYSWVTLPLSTSNVVLAALCPIPCPQFL 314
           ++P++N  F A+SSY     PL  S  +L AL P  C +FL
Sbjct: 652 DLPVINRSFEALSSYD--IPPLLAS--LLDALLPARCIEFL 688


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 175 ADDMGKLRLQFYLFHKPLFSW--KGSYVVTQVSAEKKVSFDNGLDGSVA 221
           A D+ K RLQ Y FH P  SW    + ++    +E     D   D  ++
Sbjct: 890 ATDIAK-RLQDYSFHAPTLSWPIANTLMIEPTESESMYEMDRFCDALIS 937


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 262 WIQGILLVVHSKEIPLVNNVFLAISSY 288
           W  G+ L+++  + PL++NV L++ +Y
Sbjct: 11  WATGLALLMNQGQSPLLSNVGLSVLAY 37


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/68 (19%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 107 PKLVKDNVNRNMNKCIDVGMENFMI---EVVTDKAINLPKHRKYQ--FGQGLITYANEQI 161
           P +  DN++++ +   +      M+   ++  ++   +   +K++  FG+GL+  + E+I
Sbjct: 526 PSVTHDNLSKSSDYSKNEVEREIMLGLDQIAQERREKMEARQKFEQHFGEGLVGLSEEEI 585

Query: 162 VNWLTTLA 169
           + ++T L+
Sbjct: 586 IAYVTMLS 593


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 143 KHRKYQFGQGLITYANEQIV 162
           K RKY+FG+ L+  A E IV
Sbjct: 341 KFRKYRFGRALVGIAPEDIV 360


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.142    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,351
Number of Sequences: 5004
Number of extensions: 64621
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 7
length of query: 359
length of database: 2,362,478
effective HSP length: 74
effective length of query: 285
effective length of database: 1,992,182
effective search space: 567771870
effective search space used: 567771870
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)