GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001169-TA|BGIBMGA001169-PA|undefined
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554...    30   3.3  
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169...    29   4.3  
08_02_0485 + 17669645-17669703,17670434-17670515,17670618-176707...    29   5.7  

>01_06_0461 +
           29553709-29554905,29555051-29555296,29555387-29555464,
           29555557-29555657,29555745-29555940,29556022-29556147,
           29556231-29556416,29556921-29557034,29557522-29557674,
           29558287-29558475,29558568-29558645,29558728-29558853,
           29558942-29559040,29559315-29559432,29559531-29559625
          Length = 1033

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 138 AINLPKHRKYQFGQGLITYANEQIVNWLTTLADSFRVADDMGKLRLQFYLFHKPLFSW-- 195
           A  L KH    F     T A+E I++       +    +D+ K RL  Y FH P  SW  
Sbjct: 858 AKRLEKHYPVLFRGVNGTVAHEFIIDLRGFKTTAGIEPEDVAK-RLMDYGFHAPTMSWPV 916

Query: 196 KGSYVVTQVSAEKKVSFDNGLDGSVA 221
            G+ ++    +E K   D   D  ++
Sbjct: 917 PGTLMIEPTESESKAELDRFCDALIS 942


>06_03_0741 -
           24016204-24016298,24016408-24016525,24016805-24016903,
           24016992-24017117,24017200-24017277,24017366-24017554,
           24018186-24018338,24018785-24018898,24019576-24019761,
           24019845-24019970,24020053-24020248,24020338-24020438,
           24020533-24020610,24020707-24020952,24021063-24022253
          Length = 1031

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 141 LPKHRKYQFGQGLITYANEQIVNWLTTLADSFRVADDMGKLRLQFYLFHKPLFSW--KGS 198
           L KH    F     T A+E I++       +    +D+ K RL  Y FH P  SW   G+
Sbjct: 859 LEKHYPVLFRGVNGTVAHEFIIDLRGFKTTAGIEPEDVAK-RLMDYGFHAPTMSWPVPGT 917

Query: 199 YVVTQVSAEKKVSFDNGLDGSVA 221
            ++    +E K   D   D  ++
Sbjct: 918 LMIEPTESESKAELDRFCDALIS 940


>08_02_0485 +
           17669645-17669703,17670434-17670515,17670618-17670756,
           17670880-17670926,17671013-17671090,17671189-17671259,
           17671369-17671450
          Length = 185

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 112 DNVNRNMNKCIDVGMENFMIEVVTDKAINLPKHRKY 147
           DN+   + KC+D G ++++++ V  K +++P+  KY
Sbjct: 151 DNIPERIRKCLDGGAKDYILKPV--KIVDVPRIMKY 184


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.142    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,650,240
Number of Sequences: 37544
Number of extensions: 380017
Number of successful extensions: 817
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 817
Number of HSP's gapped (non-prelim): 3
length of query: 359
length of database: 14,793,348
effective HSP length: 83
effective length of query: 276
effective length of database: 11,677,196
effective search space: 3222906096
effective search space used: 3222906096
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)