GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001169-TA|BGIBMGA001169-PA|undefined
         (359 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26417| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-21)                 31   1.4  
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_26417| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-21)
          Length = 285

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 226 FAMKAYKEGYPFNFVEGEMWEKSPFTLWDFMQQRKRWIQGILLVV 270
           F +  YK G     VE  + E+S   ++D +Q+RKR ++ +L VV
Sbjct: 151 FTVTFYKIGRKLRGVEKRLLERSRHDIFDVVQKRKRVLRVLLAVV 195


>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 261 RWIQGILLVVHSKEIPLVN--NVFLAISSYSWVTLPLSTSNVVLAALCPIPCP 311
           RW+   +++V  + +P+V+      A+       +PL TS+ ++  + P+PCP
Sbjct: 54  RWLVQRVIIVQLEMLPVVDAQEAINALMEQRLKFVPLVTSHQMVPRVPPVPCP 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.142    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,924,006
Number of Sequences: 59808
Number of extensions: 431173
Number of successful extensions: 1005
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 2
length of query: 359
length of database: 16,821,457
effective HSP length: 83
effective length of query: 276
effective length of database: 11,857,393
effective search space: 3272640468
effective search space used: 3272640468
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)