GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001169-TA|BGIBMGA001169-PA|undefined
         (359 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M64590-1|AAA36463.1| 1020|Homo sapiens glycine decarboxylase pro...    31   8.3  
M63635-1|AAA36478.1| 1020|Homo sapiens glycine decarboxylase pro...    31   8.3  
D90239-1|BAA14286.1| 1020|Homo sapiens glycine decarboxylase pre...    31   8.3  
BC111995-1|AAI11996.1| 1020|Homo sapiens glycine dehydrogenase (...    31   8.3  
BC111993-1|AAI11994.1| 1020|Homo sapiens glycine dehydrogenase (...    31   8.3  
AL353718-2|CAH74116.1| 1036|Homo sapiens glycine dehydrogenase (...    31   8.3  
AL162411-3|CAH69992.1| 1036|Homo sapiens glycine dehydrogenase (...    31   8.3  

>M64590-1|AAA36463.1| 1020|Homo sapiens glycine decarboxylase
           protein.
          Length = 1020

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 175 ADDMGKLRLQFYLFHKPLFSW--KGSYVVTQVSAEKKVSFDNGLDGSVA 221
           A D+ K RLQ Y FH P  SW   G+ +V    +E K   D   D  ++
Sbjct: 878 AVDVAK-RLQDYGFHAPTMSWPVAGTLMVEPTESEDKAELDRFCDAMIS 925


>M63635-1|AAA36478.1| 1020|Homo sapiens glycine decarboxylase
           protein.
          Length = 1020

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 175 ADDMGKLRLQFYLFHKPLFSW--KGSYVVTQVSAEKKVSFDNGLDGSVA 221
           A D+ K RLQ Y FH P  SW   G+ +V    +E K   D   D  ++
Sbjct: 878 AVDVAK-RLQDYGFHAPTMSWPVAGTLMVEPTESEDKAELDRFCDAMIS 925


>D90239-1|BAA14286.1| 1020|Homo sapiens glycine decarboxylase
           precursor protein.
          Length = 1020

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 175 ADDMGKLRLQFYLFHKPLFSW--KGSYVVTQVSAEKKVSFDNGLDGSVA 221
           A D+ K RLQ Y FH P  SW   G+ +V    +E K   D   D  ++
Sbjct: 878 AVDVAK-RLQDYGFHAPTMSWPVAGTLMVEPTESEDKAELDRFCDAMIS 925


>BC111995-1|AAI11996.1| 1020|Homo sapiens glycine dehydrogenase
           (decarboxylating) protein.
          Length = 1020

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 175 ADDMGKLRLQFYLFHKPLFSW--KGSYVVTQVSAEKKVSFDNGLDGSVA 221
           A D+ K RLQ Y FH P  SW   G+ +V    +E K   D   D  ++
Sbjct: 878 AVDVAK-RLQDYGFHAPTMSWPVAGTLMVEPTESEDKAELDRFCDAMIS 925


>BC111993-1|AAI11994.1| 1020|Homo sapiens glycine dehydrogenase
           (decarboxylating) protein.
          Length = 1020

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 175 ADDMGKLRLQFYLFHKPLFSW--KGSYVVTQVSAEKKVSFDNGLDGSVA 221
           A D+ K RLQ Y FH P  SW   G+ +V    +E K   D   D  ++
Sbjct: 878 AVDVAK-RLQDYGFHAPTMSWPVAGTLMVEPTESEDKAELDRFCDAMIS 925


>AL353718-2|CAH74116.1| 1036|Homo sapiens glycine dehydrogenase
           (decarboxylating) protein.
          Length = 1036

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 175 ADDMGKLRLQFYLFHKPLFSW--KGSYVVTQVSAEKKVSFDNGLDGSVA 221
           A D+ K RLQ Y FH P  SW   G+ +V    +E K   D   D  ++
Sbjct: 894 AVDVAK-RLQDYGFHAPTMSWPVAGTLMVEPTESEDKAELDRFCDAMIS 941


>AL162411-3|CAH69992.1| 1036|Homo sapiens glycine dehydrogenase
           (decarboxylating) protein.
          Length = 1036

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 175 ADDMGKLRLQFYLFHKPLFSW--KGSYVVTQVSAEKKVSFDNGLDGSVA 221
           A D+ K RLQ Y FH P  SW   G+ +V    +E K   D   D  ++
Sbjct: 894 AVDVAK-RLQDYGFHAPTMSWPVAGTLMVEPTESEDKAELDRFCDAMIS 941


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.327    0.142    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,471,025
Number of Sequences: 224733
Number of extensions: 2016045
Number of successful extensions: 6281
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6281
Number of HSP's gapped (non-prelim): 7
length of query: 359
length of database: 73,234,838
effective HSP length: 91
effective length of query: 268
effective length of database: 52,784,135
effective search space: 14146148180
effective search space used: 14146148180
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 66 (30.7 bits)