GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001169-TA|BGIBMGA001169-PA|undefined
         (359 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19152-4|CAA79538.2|  455|Caenorhabditis elegans Hypothetical pr...   295   3e-80
AY533305-1|AAS21307.1|  455|Caenorhabditis elegans BRE-3 protein.     295   3e-80
U70852-15|AAK29824.1|  543|Caenorhabditis elegans Hypothetical p...    31   1.7  
Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical pr...    29   6.7  
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr...    29   6.7  

>Z19152-4|CAA79538.2|  455|Caenorhabditis elegans Hypothetical
           protein B0464.4 protein.
          Length = 455

 Score =  295 bits (724), Expect = 3e-80
 Identities = 136/220 (61%), Positives = 171/220 (77%), Gaps = 3/220 (1%)

Query: 139 INLPKHRKYQFGQGLITYANEQIVNWLTTLADSFRVADDMGKLRLQFYLFHKPLFSWKGS 198
           +N  +  K+QFGQG+ITYAN  IVNWLTTL+DSFRVADDMGKLR QF LFHKPLF WKGS
Sbjct: 203 LNFCEDGKHQFGQGVITYANGDIVNWLTTLSDSFRVADDMGKLRFQFKLFHKPLFGWKGS 262

Query: 199 YVVTQVSAEKKVSFDNGLDGSVAEDCFFAMKAYKEGYPFNFVEGEMWEKSPFTLWDFMQQ 258
           YVVTQV AE+ VS+D+G++GS+AEDCFF+M A K GY F+F+EGEM EKSPFT+WDF+QQ
Sbjct: 263 YVVTQVEAERDVSYDHGMEGSIAEDCFFSMVAMKHGYSFDFIEGEMHEKSPFTMWDFLQQ 322

Query: 259 RKRWIQGILLVVHSKEIPLVNNVFLAISSYSWVTLPLSTSNVVLAALCPIP-CPQFLDIA 317
           RKRW+QGILL VHS +I +V+   LA+S Y+W T+PL++  V L  L P+P C  F D  
Sbjct: 323 RKRWLQGILLTVHSSKIAVVHKALLALSLYAWATMPLTSLQVFLCPLFPLPRCLPF-DFL 381

Query: 318 CGFTAAVNIYMYIFGVIKSFP-VHRFGPLKFILFVGGALV 356
             F  A+N+YMYIFGV+KSF   +R   L+  +++ GAL+
Sbjct: 382 LSFVGALNLYMYIFGVVKSFSHKYRNSLLRLAMYLAGALM 421



 Score =  120 bits (289), Expect = 2e-27
 Identities = 53/102 (51%), Positives = 69/102 (67%)

Query: 41  PWENYGVFGAXXXXXXXXXXXXXXPQVLCNFAGLTLFNAFPGKIRLKSSPLLAPFICIRV 100
           P  +YG+                 PQ LCN  GL +FNAF  K++LK++PLL+PF+C RV
Sbjct: 40  PVASYGLIWTVCLYLLRFTALLVLPQCLCNLGGLMMFNAFREKVQLKAAPLLSPFVCFRV 99

Query: 101 VTRGDFPKLVKDNVNRNMNKCIDVGMENFMIEVVTDKAINLP 142
           VT+G+FP LVK+N++ NM  C + GMENF+ EVVTDKAINLP
Sbjct: 100 VTKGNFPLLVKENIDTNMKTCFEAGMENFIFEVVTDKAINLP 141


>AY533305-1|AAS21307.1|  455|Caenorhabditis elegans BRE-3 protein.
          Length = 455

 Score =  295 bits (724), Expect = 3e-80
 Identities = 136/220 (61%), Positives = 171/220 (77%), Gaps = 3/220 (1%)

Query: 139 INLPKHRKYQFGQGLITYANEQIVNWLTTLADSFRVADDMGKLRLQFYLFHKPLFSWKGS 198
           +N  +  K+QFGQG+ITYAN  IVNWLTTL+DSFRVADDMGKLR QF LFHKPLF WKGS
Sbjct: 203 LNFCEDGKHQFGQGVITYANGDIVNWLTTLSDSFRVADDMGKLRFQFKLFHKPLFGWKGS 262

Query: 199 YVVTQVSAEKKVSFDNGLDGSVAEDCFFAMKAYKEGYPFNFVEGEMWEKSPFTLWDFMQQ 258
           YVVTQV AE+ VS+D+G++GS+AEDCFF+M A K GY F+F+EGEM EKSPFT+WDF+QQ
Sbjct: 263 YVVTQVEAERDVSYDHGMEGSIAEDCFFSMVAMKHGYSFDFIEGEMHEKSPFTMWDFLQQ 322

Query: 259 RKRWIQGILLVVHSKEIPLVNNVFLAISSYSWVTLPLSTSNVVLAALCPIP-CPQFLDIA 317
           RKRW+QGILL VHS +I +V+   LA+S Y+W T+PL++  V L  L P+P C  F D  
Sbjct: 323 RKRWLQGILLTVHSSKIAVVHKALLALSLYAWATMPLTSLQVFLCPLFPLPRCLPF-DFL 381

Query: 318 CGFTAAVNIYMYIFGVIKSFP-VHRFGPLKFILFVGGALV 356
             F  A+N+YMYIFGV+KSF   +R   L+  +++ GAL+
Sbjct: 382 LSFVGALNLYMYIFGVVKSFSHKYRNSLLRLAMYLAGALM 421



 Score =  120 bits (289), Expect = 2e-27
 Identities = 53/102 (51%), Positives = 69/102 (67%)

Query: 41  PWENYGVFGAXXXXXXXXXXXXXXPQVLCNFAGLTLFNAFPGKIRLKSSPLLAPFICIRV 100
           P  +YG+                 PQ LCN  GL +FNAF  K++LK++PLL+PF+C RV
Sbjct: 40  PVASYGLIWTVCLYLLRFTALLVLPQCLCNLGGLMMFNAFREKVQLKAAPLLSPFVCFRV 99

Query: 101 VTRGDFPKLVKDNVNRNMNKCIDVGMENFMIEVVTDKAINLP 142
           VT+G+FP LVK+N++ NM  C + GMENF+ EVVTDKAINLP
Sbjct: 100 VTKGNFPLLVKENIDTNMKTCFEAGMENFIFEVVTDKAINLP 141


>U70852-15|AAK29824.1|  543|Caenorhabditis elegans Hypothetical
           protein F45E4.11 protein.
          Length = 543

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 271 HSKEIPLVNNVFLAISSYSWVTLPLSTSNVVLAALCPIPCP 311
           HS   P +  +  A+    ++TL +S+SN+ +A +C   CP
Sbjct: 59  HSVLFPSMRLMLAAMLCCCFITLSISSSNLAVALICMTSCP 99


>Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical
           protein T02G6.5 protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 216 LDGSVAEDCFFAMKAYKEGYPFNFVEGEMWEKSPFTLWDFM 256
           L G ++ +C F+    KE   FN  + E+W    FTL D M
Sbjct: 428 LSGKLSIECMFSSSFNKE-ILFNIPQLEIWNALSFTLQDVM 467


>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical
           protein T19A5.1 protein.
          Length = 1280

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 47/190 (24%), Positives = 74/190 (38%), Gaps = 28/190 (14%)

Query: 144 HRKYQFGQGLITYANEQIVNWLTTLADSF-----RVADDMGKLRLQFYLFHKPLF---SW 195
           HRK Q  Q     A    +NW TT+  S      +  + M  LR +  L ++P     SW
Sbjct: 466 HRKCQRAQINRFPATNHKLNWATTMICSLSCTPEKYEESMAPLR-EKTLRNRPAINETSW 524

Query: 196 KGSYVVTQVSAEKKVSFDNGLDGSVAEDCFFAMKAYKEGYPFNFVEGEMWEKSPFTLWDF 255
           K + V     A +K  FD             +  + ++GY F  +E     K      D 
Sbjct: 525 KVTEVYPPNRAFEKTLFD------------ISRNSQQDGY-FRMIEPRFTNKEIDESVDR 571

Query: 256 MQQRKRWIQGI--LLVVHSKEIPLVNN---VFLAISSYSWVTLPLSTSNVVLAALCPIPC 310
             +R  W   +    VV S     +N    VF++  +  W+   L T+++ L +   +P 
Sbjct: 572 FWRRADWPNSVDCQAVVSSSNPFRINTFPQVFISPENRGWLVSELLTTHIGLQSADSLPL 631

Query: 311 PQFLDIACGF 320
           P F +  C F
Sbjct: 632 PWF-EPRCDF 640


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.142    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,358,955
Number of Sequences: 27539
Number of extensions: 343590
Number of successful extensions: 802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 9
length of query: 359
length of database: 12,573,161
effective HSP length: 82
effective length of query: 277
effective length of database: 10,314,963
effective search space: 2857244751
effective search space used: 2857244751
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)