GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001169-TA|BGIBMGA001169-PA|undefined
         (359 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23990.1 68417.m03448 cellulose synthase family protein simil...    33   0.29 
At4g24000.1 68417.m03449 cellulose synthase family protein simil...    32   0.51 
At4g15320.1 68417.m02344 cellulose synthase family protein simil...    29   3.6  
At1g75680.1 68414.m08792 glycosyl hydrolase family 9 protein sim...    29   3.6  
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    29   6.3  
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    28   8.4  

>At4g23990.1 68417.m03448 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 732

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 218 GSVAEDCFFAMKAYKEGYPFNFVEGE---MWEKSPFTLWDFMQQRKRWIQGILLVVHSKE 274
           GS+ ED +   + + EG+   F   +       SP +L D + Q+KRW  G+L V  S+ 
Sbjct: 442 GSLVEDYYTGYRLHCEGWRSVFCRPKRAAFCGDSPKSLIDVVSQQKRWAIGLLEVAISRY 501

Query: 275 IPLVNNV 281
            P+   V
Sbjct: 502 SPITYGV 508


>At4g24000.1 68417.m03449 cellulose synthase family protein similar
           to cellulose synthase from Gossypium hirsutum
           [gi:1706956], cellulose synthase-5 from Zea mays
           [gi:9622882]
          Length = 722

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 218 GSVAEDCFFAMKAYKEGYPFNF---VEGEMWEKSPFTLWDFMQQRKRWIQGILLVVHSKE 274
           GS+ ED F     + EG+   F    +   +  SP  L D + Q+ RW  G+L V  S+ 
Sbjct: 432 GSLVEDYFTGFMLHCEGWRSIFCSPTKAAFYGDSPKCLTDVIGQQIRWSVGLLEVAFSRY 491

Query: 275 IPLVNNV 281
            PL   +
Sbjct: 492 NPLTYGI 498


>At4g15320.1 68417.m02344 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 828

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 219 SVAEDCFFAMKAYKEGYPFNFVEGE---MWEKSPFTLWDFMQQRKRWIQGILLVVHSKEI 275
           SVAED   ++  +  G+  +F+  +       +P    + + Q +RW  G + V+ +K+ 
Sbjct: 545 SVAEDTNTSIGIHLRGWTSSFISPDPPAFLGSTPSVGPEAIVQHRRWATGSIEVLFNKQS 604

Query: 276 PLV----NNVFLAISSYSWVTLPLSTSNVVLAALCPIPC 310
           PL+       F    +Y WV + + +   ++  L P  C
Sbjct: 605 PLIGFRRKIKFRQRLAYFWVLMCIRSIPELVYCLLPAYC 643


>At1g75680.1 68414.m08792 glycosyl hydrolase family 9 protein
           similar to endo-beta-1,4-glucanase GB:AAC12685
           GI:3025470 from [Pinus radiata]
          Length = 525

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 138 AINLPKHRKYQFGQGLITYANEQI--VNWLTTLADSFRVADDMGKLRLQFYLFHKPL-FS 194
           ++N+P+ +K+    G   Y +E +   +WL    +     D +     +F  F  P  FS
Sbjct: 248 SVNIPEVQKFYNSTG---YGDELLWAASWLYHATEDKTYLDYVSNHGKEFASFGNPTWFS 304

Query: 195 WKGSYVVTQVSAEKKVSFDNGLDGS 219
           W      TQV   + + F   L GS
Sbjct: 305 WDNKLAGTQVLLSRLLFFKKDLSGS 329


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 138 AINLPKHRKYQFGQGLITYANEQIVNWLTTLADSFRVADDMGKLRLQFYLFHKPLFSW-- 195
           A  L KH    F     T A+E I++       +    +D+ K RL  Y FH P  SW  
Sbjct: 864 AKRLEKHYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAK-RLMDYGFHGPTMSWPV 922

Query: 196 KGSYVVTQVSAEKKVSFDNGLDGSVA 221
            G+ ++    +E K   D   D  ++
Sbjct: 923 PGTLMIEPTESESKAELDRFCDALIS 948


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 176 DDMGKLRLQFYLFHKPLFSW--KGSYVVTQVSAEKKVSFDNGLDGSVA 221
           +D+ K RL  Y FH P  SW   G+ ++    +E K   D   D  ++
Sbjct: 908 EDVAK-RLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALIS 954


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.142    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,084,188
Number of Sequences: 28952
Number of extensions: 331682
Number of successful extensions: 796
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 6
length of query: 359
length of database: 12,070,560
effective HSP length: 82
effective length of query: 277
effective length of database: 9,696,496
effective search space: 2685929392
effective search space used: 2685929392
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)