Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001168-TA|BGIBMGA001168-PA|undefined
         (615 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    26   0.66 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   8.2  

>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 470 PELENGGDRKGDSQSRYRRFGRGVRGAPNGHRGRGAFP 507
           P++ NGG    +   +++ +G  V+  P G R R A P
Sbjct: 11  PDMRNGGVVSAEHPHQHQHYGAAVQ-VPQGGRRRAARP 47


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 1   MPSAANAKSEKPASSEDKDTPIRQIMTIIEH-KIRNLEKRKSKLTSYRDLQKAGKELNSD 59
           + SA+NAK   P               ++ + +I  L+K       + D QK       D
Sbjct: 269 LSSASNAKLGAPVKGAGNSGKYTGEAGMLGYNEIVELQKEGGWKVVWDDTQKNTHMYKGD 328

Query: 60  QKVAVAKYDEVAQTLEFARDLS 81
           Q VA      ++  +E+A+ L+
Sbjct: 329 QWVAFDSPKAISNKVEYAKSLN 350


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,295
Number of Sequences: 317
Number of extensions: 4227
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 615
length of database: 114,650
effective HSP length: 61
effective length of query: 554
effective length of database: 95,313
effective search space: 52803402
effective search space used: 52803402
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)