Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001168-TA|BGIBMGA001168-PA|undefined
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    30   1.1  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    29   1.9  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    28   4.4  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   5.8  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    27   7.7  

>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 5   ANAKSEKPASSEDKDTPIRQIMTIIEHKIR--NLEKRKSKLTSYRDLQKAGKELNSDQKV 62
           A+  +++   ++++DTP+  +    +  +R  N EK+ SKL + R  ++  KE+      
Sbjct: 72  ADILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTS 131

Query: 63  AVAKYDEVAQTL 74
            VA   E A+ L
Sbjct: 132 VVAVNAETAKAL 143


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 430 QPALVATLVHAS-VTP--VLQEDTSPVSPVTDKEDDCRKDGPSPELENGGDRKGDSQSRY 486
           Q   +AT  H S + P  V   DTSPVS  T+ +D    D PS    +  +R+   ++R 
Sbjct: 60  QSTPIATKSHLSCINPQYVNPFDTSPVSVDTEFQDTYLLDAPSFAQPHFSERQSVDKTRS 119

Query: 487 RRFGRGVRGA--PNGHR 501
           R   R  R    PN H+
Sbjct: 120 RCLSRNRRRKRHPNLHK 136


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 283 LPTITLQEVEHAYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSP 341
           LP+ T   +    +      Q+P  ++ G  N++    S    P    QPP IP + +P
Sbjct: 187 LPSTTPLYIPPVNYGANQVSQQPNPQLPGVSNYY--NPSATSKPAVNVQPPRIPTKATP 243


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 4   AANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA 63
           A N+K+ + + SE+ +  I ++   ++ + RN   R+ KL    DL+K+ K+     K+ 
Sbjct: 533 AINSKNVQQSRSEELEQQISKLTDNLQ-EYRNTV-RELKL----DLEKSKKKNEDLSKLE 586

Query: 64  VAKYDEVAQTLEFARDLSKQ 83
           V K +E+A   +    L+KQ
Sbjct: 587 VEKVEEIANLKKELTHLAKQ 606


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 12/85 (14%)

Query: 7   AKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 66
           A   K ASS   D+P+R+ +++      +  +  +  +SY          N+D+ +  + 
Sbjct: 379 ANKHKTASSATVDSPLRRSLSV------DAMQSNASFSSYSSTS------NTDKSLRPSS 426

Query: 67  YDEVAQTLEFARDLSKQVTAIAISS 91
           Y  V+++  F  D+S+    I++++
Sbjct: 427 YSAVSESSNFTHDVSRDNKEISLNA 451


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,013
Number of Sequences: 5004
Number of extensions: 77061
Number of successful extensions: 218
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 5
length of query: 615
length of database: 2,362,478
effective HSP length: 77
effective length of query: 538
effective length of database: 1,977,170
effective search space: 1063717460
effective search space used: 1063717460
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)