Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001168-TA|BGIBMGA001168-PA|undefined
(615 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family... 33 0.42
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 32 0.97
At1g69600.1 68414.m08005 zinc finger homeobox family protein / Z... 31 1.7
At5g17910.1 68418.m02100 expressed protein 31 2.2
At3g29033.1 68416.m03629 glycine-rich protein 30 3.9
At1g11400.2 68414.m01310 expressed protein 30 3.9
At1g11400.1 68414.m01309 expressed protein 30 3.9
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 30 5.2
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 30 5.2
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 30 5.2
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 30 5.2
At1g26945.1 68414.m03285 expressed protein supported by full len... 30 5.2
At3g06670.1 68416.m00786 expressed protein 29 6.9
At2g22610.1 68415.m02680 kinesin motor protein-related 29 6.9
At4g40020.1 68417.m05666 hypothetical protein 29 9.1
At4g28990.1 68417.m04143 RNA-binding protein-related contains we... 29 9.1
>At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family
protein
Length = 523
Score = 33.5 bits (73), Expect = 0.42
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 301 PQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPI 345
PQQ+P E GS F LQE + D+ P P + P Q PP I
Sbjct: 160 PQQQPNDESQGSPVFVKLQEMQ-DATSSPPPPESKPGQADPPDNI 203
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 32.3 bits (70), Expect = 0.97
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 432 ALVATLVHASVTPVLQEDTSPVSPVTDKEDDCRKDGPSPE--LENGGDRKGDSQSRYRRF 489
A+VA V S T V+ E P T+KE+D + G + E ++ R GD R
Sbjct: 630 AVVAAAVVKS-TAVVVESVESEEPKTEKEEDEERSGCNGESSAKDAAARAGDPDEEKYRL 688
Query: 490 GRGVRG 495
G GV G
Sbjct: 689 GYGVAG 694
>At1g69600.1 68414.m08005 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 242
Score = 31.5 bits (68), Expect = 1.7
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 312 SQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQL 358
S+N FL I SP GT PP+ VS P P T H+V L
Sbjct: 84 SENLNFLTAPPISSPSGTESPPS--RHVSSPVPCSYYTSAPPHHVIL 128
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 31.1 bits (67), Expect = 2.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 23 RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 75
RQ+ + E K+ ++ +S T D +K E N+D++ +AK D V+ E
Sbjct: 524 RQLSEVSESKVSSIPDTESVCTVLEDDEKKVDENNADRETKIAKVDMVSDNDE 576
>At3g29033.1 68416.m03629 glycine-rich protein
Length = 167
Score = 30.3 bits (65), Expect = 3.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 531 GFQNRQYDGYQ-NRHANRTGGDGYYGNGDVSEGAH 564
G+Q DGYQ N N G GY G G+V+ G +
Sbjct: 95 GYQADYADGYQGNLAGNPPGSGGYQGIGNVNSGGY 129
>At1g11400.2 68414.m01310 expressed protein
Length = 204
Score = 30.3 bits (65), Expect = 3.9
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 29 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARD 79
+E +IR L K+K +LT + + A ++LN +Q +K +E Q L+ D
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALED 201
>At1g11400.1 68414.m01309 expressed protein
Length = 204
Score = 30.3 bits (65), Expect = 3.9
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 29 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARD 79
+E +IR L K+K +LT + + A ++LN +Q +K +E Q L+ D
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALED 201
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 29.9 bits (64), Expect = 5.2
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 282 PLPTITLQEVEHAYFAQQ--YPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQV 339
P PT +L + + QQ YPQQ P + + + +E P PP P
Sbjct: 317 PPPTQSLHQPPYQPPPQQPQYPQQPP--PQLQHPSGYNPEEPPYPQQSYPPNPPRQPPSH 374
Query: 340 SPPGPIPTQTFTN 352
PPG P+Q + N
Sbjct: 375 PPPGSAPSQQYYN 387
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 29.9 bits (64), Expect = 5.2
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 459 KEDDCRKDGPSPE--LENGGDRKGDSQSRYRRFGRGVRGAPNGHRGRGAFP 507
K+DD R +G SPE + +R+ S S Y+R RG+P+ GRGA P
Sbjct: 127 KDDDARGNGHSPERRRDRSPERRRRSPSPYKR----ERGSPD--YGRGASP 171
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.9 bits (64), Expect = 5.2
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 459 KEDDCRKDGPSPE--LENGGDRKGDSQSRYRRFGRGVRGAPNGHRGRGAFP 507
K+DD R +G SPE + +R+ S S Y+R RG+P+ GRGA P
Sbjct: 168 KDDDARGNGHSPERRRDRSPERRRRSPSPYKR----ERGSPD--YGRGASP 212
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 29.9 bits (64), Expect = 5.2
Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 456 VTDKEDDCRKDGPSPELENGGDRKGDSQSRYRRFGRGVRGAPNGHRGRGAFPXXXXXXXX 515
VT K++ KD + E NG D G S + RG G GHRG G
Sbjct: 54 VTFKDEKAMKD--AIEGMNGQDLDGRSITVNEAQSRG-SGGGGGHRGGGGGGYRSGGGGG 110
Query: 516 XXXXXXXXXXXSNR-EGFQNRQYDGYQNRHANRTGGDGYYGNG 557
R EG Y G +++R GG G YG G
Sbjct: 111 YSGGGGSYGGGGGRREG--GGGYSGGGGGYSSRGGGGGSYGGG 151
>At1g26945.1 68414.m03285 expressed protein supported by full
length cDNA gi:26453215 from [Arabidopsis thaliana]
Length = 94
Score = 29.9 bits (64), Expect = 5.2
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 MPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKS-KLTSYRDLQKAGKELNSD 59
M S +++S + SS D I +++ ++H I L +R+S K+++ + LQ+ + +
Sbjct: 1 MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60
Query: 60 QKVAVAKYDEVAQTLEFARDLSKQVTAI 87
+ D +++ L D S + I
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAII 88
>At3g06670.1 68416.m00786 expressed protein
Length = 865
Score = 29.5 bits (63), Expect = 6.9
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 3 SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKV 62
SA+N + EKPAS+ K+ P + + + R L Y D + +K
Sbjct: 672 SASNTQKEKPASNIQKEQPKPHLSNGVAASPTSSSPRSGGLVDYEDDEDDEDYKPPPRKQ 731
Query: 63 AVAKYDEVAQTLEFAR 78
A DE + L R
Sbjct: 732 PEASEDEEGELLRLKR 747
>At2g22610.1 68415.m02680 kinesin motor protein-related
Length = 1093
Score = 29.5 bits (63), Expect = 6.9
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 15 SEDKDTPIRQIMTIIEHKIRNLE-KRKSKLTSYRDLQKAGKELNS 58
S KD I+++ E I+NLE K K + SYR LQ+ K+L +
Sbjct: 777 SRSKDESIKKM----EENIQNLEGKNKGRDNSYRSLQEKNKDLQN 817
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 29.1 bits (62), Expect = 9.1
Identities = 15/70 (21%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 8 KSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKEL--NSDQKVAVA 65
+ EK S +++ ++++ ++E KI EK++ K + ++ +++ KE +S++K
Sbjct: 373 EEEKQRSLNRQESMPKEVVEVVEKKIEEKEKKEEKKENKKEKKESKKEKKEHSEKKEDKE 432
Query: 66 KYDEVAQTLE 75
K ++ Q +
Sbjct: 433 KKEQTHQNFD 442
>At4g28990.1 68417.m04143 RNA-binding protein-related contains weak
similarity to Swiss-Prot:Q01844 RNA-binding protein EWS
(EWS oncogene)(Ewing sarcoma breakpoint region 1
protein) [Homo sapiens]
Length = 347
Score = 29.1 bits (62), Expect = 9.1
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 445 VLQEDTSPVSPVTDKEDDCRKDGPSPELENGGDRKGDSQSRYRRFGRGVRGAPNGHRGR 503
VL+E S P+ D +DGP P L GG R F R R G RGR
Sbjct: 285 VLRE-RSRSPPLRDVPPPPLRDGPPPSLRGGGPPLHRDYRRDSHFDRERRDDGRGGRGR 342
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.132 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,936
Number of Sequences: 28952
Number of extensions: 429386
Number of successful extensions: 1395
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1392
Number of HSP's gapped (non-prelim): 17
length of query: 615
length of database: 12,070,560
effective HSP length: 85
effective length of query: 530
effective length of database: 9,609,640
effective search space: 5093109200
effective search space used: 5093109200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)
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