Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001168-TA|BGIBMGA001168-PA|undefined
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426... 35 0.22
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 32 1.2
03_06_0386 + 33555682-33556344,33557138-33557299 31 2.0
04_01_0386 + 5100249-5100562,5100877-5100927,5101201-5101204 31 2.7
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 4.7
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 30 4.7
04_03_0991 - 21500143-21500799,21500834-21501172 30 4.7
11_06_0197 + 21149453-21149630,21149930-21149996,21150142-211502... 30 6.2
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450... 30 6.2
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715 30 6.2
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 29 8.2
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159... 29 8.2
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 29 8.2
>03_06_0704 +
35641774-35642031,35642122-35642446,35642546-35642699,
35643662-35643706,35644121-35644180,35644532-35644694,
35645356-35645717,35645985-35646303
Length = 561
Score = 34.7 bits (76), Expect = 0.22
Identities = 16/68 (23%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 2 PSAANAKSEKPASSEDKDTPIRQ--IMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSD 59
P ++++ + A+ ED++ I + ++ +I H+ R++E+ K KL+ Y+ L ++ ++
Sbjct: 37 PQSSSSATATAATQEDEEDDIAEEAVLALIAHRERDVERCKLKLSHYQSLLDTAEKKLAE 96
Query: 60 QKVAVAKY 67
+ +A+Y
Sbjct: 97 AQDRLARY 104
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 32.3 bits (70), Expect = 1.2
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 3 SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQK--AGKELNSDQ 60
S + E P + E++ P + MT+ E++ EKRK+ L + +K KEL + Q
Sbjct: 224 SEVDKDKESPENEEEEKEPEDKEMTLEEYEKVLEEKRKALLALKAEERKVEVDKELQAMQ 283
Query: 61 KVAVAK-YDEVAQTLEFARDLSKQ 83
+++V K +EV L +DL K+
Sbjct: 284 QLSVKKANEEVFIKLGSDKDLKKK 307
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 31.5 bits (68), Expect = 2.0
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 473 ENGGDRKGDSQSRYRRFGRGVRGAPNGHRG 502
E GG+R G+ R FGRG RG G RG
Sbjct: 3 ERGGERGGERGGFGRGFGRGGRGDRGGRRG 32
>04_01_0386 + 5100249-5100562,5100877-5100927,5101201-5101204
Length = 122
Score = 31.1 bits (67), Expect = 2.7
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 128 GSADARTDFINGTNGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLY 187
GS D R + A++ D + ++ P +TP H + + + R A HL
Sbjct: 38 GSIDVRAGGAGDGSAASEYCHDAVAAAAEVIPLLTPLHAVPAAPAASDQVSGGRTARHLT 97
Query: 188 SIIDGKPKEVL 198
++ G +E+L
Sbjct: 98 EVVAGGGREIL 108
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 4.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 321 SEIDSPVGTPQPPAIPNQVSPPGPIP 346
S + P P PP++PN++ PP P P
Sbjct: 631 SVLPPPPPPPPPPSLPNRLVPPPPAP 656
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 30.3 bits (65), Expect = 4.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 326 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQL 358
P P PP P +PPGP PT+ H +L
Sbjct: 146 PKAAPPPPPPPPPHAPPGPPPTKGVATPHAKKL 178
>04_03_0991 - 21500143-21500799,21500834-21501172
Length = 331
Score = 30.3 bits (65), Expect = 4.7
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 299 QYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPI 345
+Y + +T V F LQ +ID TP PP P V PP +
Sbjct: 116 EYLRDDCLTIVCDLTVFMELQTEDIDVDTATPPPPPPPTVVVPPSDL 162
>11_06_0197 +
21149453-21149630,21149930-21149996,21150142-21150244,
21150901-21150971,21151091-21151154,21151239-21151304,
21151416-21151463,21151544-21151606,21151680-21151736,
21151884-21151950,21151969-21152042,21152176-21152244,
21152323-21152414,21152782-21152860,21153233-21153398,
21153826-21153950,21154089-21154351,21154473-21154569,
21154659-21154820,21154904-21155008,21155935-21156180
Length = 753
Score = 29.9 bits (64), Expect = 6.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 169 EEGQSGFHLQITRAAEHLYSIIDGKPKEVLGTTYLRIKEIVSTV 212
E Q+ + EH SI++ K +E G +R+KE STV
Sbjct: 512 ELDQTTIRKMVMELREHARSIVEEKAREEAGNVLMRMKERFSTV 555
>09_02_0121 +
4502628-4502696,4503727-4503829,4504205-4504328,
4505963-4506306,4506383-4506487,4507907-4508288,
4509173-4509437,4509936-4510094,4511150-4511201,
4511266-4511462,4512865-4513350,4513797-4514093
Length = 860
Score = 29.9 bits (64), Expect = 6.2
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 317 FLQESEIDSPVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLP 359
F+ S +P+ TP P A+PN V P P Q F QH LP
Sbjct: 608 FVLPSVGSTPLATPTPGAVPNSVGIPQQ-PLQLF-RQHLGVLP 648
>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
Length = 1536
Score = 29.9 bits (64), Expect = 6.2
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 325 SPVGTPQPPAI-PNQVSPPGPIPTQTFTNQHYVQLPGG 361
+P G P P+I P + P G +P Q T Q+ + LP G
Sbjct: 1413 APAGVPYFPSIAPTLLGPAGALPAQ-HTRQYAINLPEG 1449
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 29.5 bits (63), Expect = 8.2
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 9 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELN 57
S K +K P R M +EH+ N+EK S+ ++K+ + ++
Sbjct: 290 SRKSTDRREKSRPTRDRMRGVEHRYSNVEKTDKLKFSFDHMEKSRRSID 338
>08_02_1416 -
26915306-26915459,26915553-26915668,26915798-26915910,
26915995-26916130,26916219-26916338,26916472-26916648,
26916790-26916862,26916948-26917083,26917179-26918055,
26918138-26918331,26918438-26918620,26918730-26918796,
26918900-26919092,26919317-26919363,26919478-26919574,
26919663-26919790,26919905-26920009,26920763-26920879
Length = 1010
Score = 29.5 bits (63), Expect = 8.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 441 SVTPVLQEDTSPVSPVTDKEDDCRKDGPSPE 471
+V P+L E S SP E+ C DGP PE
Sbjct: 858 TVKPLLVELGSGTSPNKKNEEKCAADGPYPE 888
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 29.5 bits (63), Expect = 8.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 438 VHASVTPVLQEDTSPVSPVTDKEDDCRKDGPSPELENGGDRKG 480
V AS P ++ DTS VT E+ K+ P+ E +KG
Sbjct: 260 VEASAWPAVESDTSEFEFVTSDEEAADKEAPAAEPAKTKGKKG 302
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.132 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,187
Number of Sequences: 37544
Number of extensions: 568345
Number of successful extensions: 1765
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1741
Number of HSP's gapped (non-prelim): 27
length of query: 615
length of database: 14,793,348
effective HSP length: 86
effective length of query: 529
effective length of database: 11,564,564
effective search space: 6117654356
effective search space used: 6117654356
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)
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