Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001168-TA|BGIBMGA001168-PA|undefined
(615 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 6e-28
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 36 0.13
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.13
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 35 0.22
SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.68
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 32 1.2
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0) 32 1.6
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 31 2.7
SB_36777| Best HMM Match : VWA (HMM E-Value=0) 31 3.6
SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.6
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 31 3.6
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.8
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.8
SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20) 30 4.8
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 30 4.8
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.3
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 30 6.3
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 122 bits (295), Expect = 6e-28
Identities = 76/223 (34%), Positives = 115/223 (51%), Gaps = 13/223 (5%)
Query: 1 MPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQ 60
MPSA++ S+ A + D + + ++E K+RNLEKRK KL Y+ +G+ELN+DQ
Sbjct: 1 MPSASSKPSDSQALMDSSDIA-KSGLLLVEKKVRNLEKRKLKLDGYKKQMDSGQELNADQ 59
Query: 61 KVAVAKYDEVAQTLEFARDLSKQVTAIAISSXXXXXXXXXXXXWVRYAAETN----KIKE 116
K A+A D V L+ A+DL KQ + + A+ N K+ E
Sbjct: 60 KAAIANLDVVEMNLDMAKDLLKQFQQMHSEYQRQQKKQARRDQVAQQQAQHNADVLKVNE 119
Query: 117 VLLILDCLMQMGSADARTDFINGTNGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFH 176
V L L LM S D RTDF+NGTNGA +TED +D+ Y +TP +EE
Sbjct: 120 V-LELQHLMDSLSEDVRTDFLNGTNGAVVVTEDQFVQIDEFYKLITP----DEESDVPVA 174
Query: 177 LQITRAAEHLYSIIDGKPKEVLGTTYLRIKEIVSTVHECGYFD 219
Q+ A+EH+ ++D V+ + +++ + +CGYF+
Sbjct: 175 KQLRTASEHIVKLLDHNNSAVVDKD---LCQMIENIKKCGYFE 214
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 35.5 bits (78), Expect = 0.13
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 320 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGGR 362
+S ++S P PP IP + SPPG PIPTQ N HY LPG +
Sbjct: 358 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSK 400
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 35.5 bits (78), Expect = 0.13
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 320 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGGR 362
+S ++S P PP IP + SPPG PIPTQ N HY LPG +
Sbjct: 325 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSK 367
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 34.7 bits (76), Expect = 0.22
Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 5 ANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKL-TSYRDLQKAGKELNSDQKVA 63
A+ K++K A ++ IRQ I +++ NL+++ +K+ YR L K + +N D++
Sbjct: 3701 ASRKNDKTAELTHENDKIRQEKDDIANELMNLKEKFAKVEEEYRVLVKDTESINRDKQTT 3760
Query: 64 VAKYDEV 70
V++ D++
Sbjct: 3761 VSELDDL 3767
>SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 33.1 bits (72), Expect = 0.68
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 459 KEDDCRKDGPSP-ELENGGDRKGDSQSRYRRFGRGVRGAPNGHRGRGAF 506
+ED ++ G SP ++E GGDR G R RG RG G RGRG F
Sbjct: 119 REDGGQEGGDSPVKVEQGGDRGGFGS---RGGNRGARG--TGGRGRGGF 162
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 32.3 bits (70), Expect = 1.2
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 18 KDTPIRQIMTIIEHKIRNLEKRKSKLTSY-RDLQKAGKELNSDQKVAVAK 66
KD+ ++ ++ E KIR L+KR S+L S R L+ K+L D+K A+ K
Sbjct: 322 KDSGNQKATSLGEEKIRKLKKRNSELVSIARQLEDKAKKL-QDEKNAILK 370
>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
Length = 1014
Score = 31.9 bits (69), Expect = 1.6
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 8 KSEKPASSEDKDTPIRQIMTIIEHKIR-NLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 65
K + E KD+ +++I TI+ +I L+K K + SY + QK +EL ++ +A
Sbjct: 178 KQSAQRTIEKKDSKLQEIETILAEEITPTLKKLKEERASYLEYQKVMRELEHFTRLFIA 236
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 31.1 bits (67), Expect = 2.7
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 326 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPG 360
P+G P +P PPGP P TF + H+ Q G
Sbjct: 898 PMGPMGDPGLPGPPGPPGP-PVSTFYHHHHHQHHG 931
>SB_36777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1303
Score = 30.7 bits (66), Expect = 3.6
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 294 AYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIP 346
+YF Q + + + +Q + ++ + V TP P +PN V P P P
Sbjct: 1221 SYFRGQISCMQVYDKPLNAQQIVYARDICDNLQVSTPSPSLVPNPVPQPAPAP 1273
>SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 30.7 bits (66), Expect = 3.6
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 30 EHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 75
+ KIRNL+K+ ++ + QKAGK+L +Q + D + + ++
Sbjct: 65 DKKIRNLKKKLRQIEELKTQQKAGKQLEVNQLEKLKNEDALLKEIK 110
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 30.7 bits (66), Expect = 3.6
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 9 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA 63
+E+P + + T++++ + + ++ T +RD+Q+ GKE NSD ++
Sbjct: 1928 TEQPVAPSASLQTTKAEKTLVKNTAESTKYTETSSTQHRDIQQRGKEQNSDDALS 1982
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 30.3 bits (65), Expect = 4.8
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 3 SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKV 62
S AK + E + I ++ +E LE+ + +L+ LQ KEL S++K
Sbjct: 1680 SLDQAKKKNHEEEERLEAEIAELANTVETLRTELEQSQVRLSK---LQTQVKELKSEKKE 1736
Query: 63 AVAKYDEVAQTLEFARDLS 81
K DE+ + R+LS
Sbjct: 1737 LQRKVDELTSEAQRRRNLS 1755
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 30.3 bits (65), Expect = 4.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 447 QEDTSPVSPVTDKEDDCRKDGPSPELENGGDRKGDSQSRYRRFGRGVRGAPNG 499
Q D+S + T ++ D + G +R + R GRGVRGA G
Sbjct: 1260 QSDSSSYTTATSASEERSGDELDGGKKQGAERSTERPRSANRIGRGVRGASGG 1312
>SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20)
Length = 470
Score = 30.3 bits (65), Expect = 4.8
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 5 ANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRD--LQKAGKELNSDQKV 62
A + + A E+K R + I+ +I LEK ++ L S D QK K+L ++++
Sbjct: 222 ALVEKAQEALEENKHATRRDLDAFIDKQISALEKMRADLKSEIDSACQKQEKQLTAEREN 281
Query: 63 AVAKYDEVAQTLEFARDLSKQVTAIAISS 91
+ +L+FA L + + + S
Sbjct: 282 LSVRLASARSSLDFAERLCTESCDVGLLS 310
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 30.3 bits (65), Expect = 4.8
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 154 LDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLYSIIDGKPKEVLGTTYLRIKE 207
L++L P + P ELN+E + LQ+ + +Y + + + TYL + E
Sbjct: 300 LNELKPYLEPSAELNDERRIDIMLQMGFTRDEIYEALSNNRYDEVMATYLLLDE 353
>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 29.9 bits (64), Expect = 6.3
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 147 TEDDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLYSIIDGKPKEVLGTTYLRIK 206
TED++K L D++P + + + + + + A HL ++ G+ LG Y R K
Sbjct: 177 TEDEIKDLKDMFPSI--EESVIKSVLEACNGDVDAATTHLLTMSAGETDLRLGGAYKRTK 234
Query: 207 EIVSTVHE 214
+ + + +
Sbjct: 235 SVFANISQ 242
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 29.9 bits (64), Expect = 6.3
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 9 SEKPASSEDKDTPIRQIMTIIEHKIRNLEK-RKSKLTSYRDLQKAGKELNSDQKVAVAKY 67
SE A ++KD + + + + KI+ + +KSK +L KAGK + + V K
Sbjct: 861 SESEAEDDEKD--VEEKHEVKQDKIKKKKHDKKSKAKDKDNLAKAGKAIQAILDVTTRKK 918
Query: 68 DEVAQTLE 75
+ AQ+L+
Sbjct: 919 ADAAQSLQ 926
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.132 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,661,617
Number of Sequences: 59808
Number of extensions: 598157
Number of successful extensions: 1801
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1776
Number of HSP's gapped (non-prelim): 37
length of query: 615
length of database: 16,821,457
effective HSP length: 86
effective length of query: 529
effective length of database: 11,677,969
effective search space: 6177645601
effective search space used: 6177645601
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)
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