GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001168-TA|BGIBMGA001168-PA|undefined
         (615 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    31   0.12 
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    28   0.63 
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    28   0.84 
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    27   1.9  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    26   2.6  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   4.5  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    25   7.8  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 8   KSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK- 66
           + E+ A+ +D+   +R  +   EH+IRN E   +K  S  D  +A  E    + VA+ + 
Sbjct: 324 QEEQLAAVDDELKKLRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEA 383

Query: 67  YDEVAQTLE 75
           Y  V +TL+
Sbjct: 384 YGTVRRTLQ 392


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
            anion exchanger protein.
          Length = 1102

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 13/61 (21%)

Query: 147  TEDDLKILDDLYPEVTPK------HELNEEGQSGFHLQITRAAEHLYSIIDGKPKEVLGT 200
            T+ +LKILDD+ PE+T +      H+L E+G+ G + ++          I  KPK+   T
Sbjct: 1029 TKRELKILDDIMPEMTKRARADDLHQL-EDGEVGIYRRLVGCC------IGAKPKQQPVT 1081

Query: 201  T 201
            T
Sbjct: 1082 T 1082


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 473 ENGGDRKGDSQSRYRRFGRGVRGAPNGHRGRG 504
           +NGG   GD    Y   GRG RG   G RGRG
Sbjct: 53  DNGGYGGGDDG--YGGGGRGGRGGRGGGRGRG 82


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 321 SEIDSPVGTPQPPAIPNQVSPP-------GPIPTQTFTNQHYVQ 357
           S + SP G+     +P+Q  PP       GPIP+Q    QH  Q
Sbjct: 216 STLSSPSGSRMEYLLPHQQHPPGAGVQGAGPIPSQQKHQQHQQQ 259


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 9/57 (15%)

Query: 426  HHTMQPALVATLVHASVTPVLQEDTSPVSPVT------DKEDDCRKDGPSPELENGG 476
            ++ M+  +++T +  + +   +ED  P +P T      ++E+  R  G +PE E+GG
Sbjct: 1514 YNNMRTGVISTAIPEANS---EEDIVPPAPATATTKSVEREEPVRASGKAPESESGG 1567


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 327 VGTPQPPAIPNQVSPPG 343
           +GTP PP  P  V P G
Sbjct: 145 LGTPGPPGYPGDVGPKG 161


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 46  YRDLQKAGKELNSDQKVAVA------KYDEVAQTLEFARD 79
           +  L  AG+EL+S  KVA+        YD +  TLE   D
Sbjct: 125 FSSLMNAGQELDSSLKVAMVLKSMPESYDHLTTTLETRSD 164


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.314    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,224
Number of Sequences: 2123
Number of extensions: 19389
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 8
length of query: 615
length of database: 516,269
effective HSP length: 68
effective length of query: 547
effective length of database: 371,905
effective search space: 203432035
effective search space used: 203432035
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)