Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001167-TA|BGIBMGA001167-PA|IPR003118|Sterile alpha
motif/pointed, IPR000418|Ets, IPR010993|Sterile alpha motif homology
         (476 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    53   5e-09
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    53   5e-09
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.50 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.66 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   1.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   1.2  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   1.5  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   1.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   2.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   2.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.5  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   4.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   6.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   6.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   8.2  

>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 52.8 bits (121), Expect = 5e-09
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 53  LPPEPRLWTREDVSVFLKWCEREFDLPNFDMDLFQMNGKALCLLTKTDLGERCPGAGDVL 112
           LP +PR WTRE V+ ++    ++  LP      F MNGKALCL++      R P  G +L
Sbjct: 32  LPKDPRQWTREHVAQWINLVTQQHGLPEVPSSRFLMNGKALCLMSLGMFLSRVPLGGKLL 91

Query: 113 HNVLQMLVRYAALLG 127
           +   Q+ +  AAL G
Sbjct: 92  YKDFQLRL-CAALYG 105


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 52.8 bits (121), Expect = 5e-09
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 53  LPPEPRLWTREDVSVFLKWCEREFDLPNFDMDLFQMNGKALCLLTKTDLGERCPGAGDVL 112
           LP +PR WTRE V+ ++    ++  LP      F MNGKALCL++      R P  G +L
Sbjct: 32  LPKDPRQWTREHVAQWINLVTQQHGLPEVPSSRFLMNGKALCLMSLGMFLSRVPLGGKLL 91

Query: 113 HNVLQMLVRYAALLG 127
           +   Q+ +  AAL G
Sbjct: 92  YKDFQLRL-CAALYG 105


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 26.2 bits (55), Expect = 0.50
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 175 PNSVTLSPAPSVDSSGSPQRGDTVTYAPAYAPSVPPTTQAASSGSNHSDSDEEGQYAPPP 234
           PNS   SPAP  + + SP  GD  T +   + S  P        ++  +S E       P
Sbjct: 39  PNSAA-SPAPPEEEAASPTPGDVPTPSSPRSISEDP-LNCRDLPNSRCNSRESSDSLVQP 96

Query: 235 RSP 237
           R P
Sbjct: 97  RCP 99


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 0.66
 Identities = 12/40 (30%), Positives = 15/40 (37%)

Query: 197  TVTYAPAYAPSVPPTTQAASSGSNHSDSDEEGQYAPPPRS 236
            T T  P    ++PP           S   E GQY P P +
Sbjct: 1075 TTTNWPTQGTTIPPPAVVMPEVDKPSQPCEPGQYVPDPHN 1114


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 219 SNHSDSDEEGQYAPPPRSPKEAPITSPAPQNHPTQQHPHYRAQHREFFPNDMPES----- 273
           +NH + D    Y  P   P         P +  T+   +Y + H +F+ ++  ++     
Sbjct: 440 NNHYNGDPN--YISPEVFPNTNNAIMTPPASVQTESSDNYNSFH-QFYSSESSQNQVAPT 496

Query: 274 --NTNGRLLWDFLQQLLNDPTQRY 295
             N+N    ++FL  L ND T  Y
Sbjct: 497 GENSNSSSDFNFLSNLANDYTPEY 520


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 219 SNHSDSDEEGQYAPPPRSPKEAPITSPAPQNHPTQQHPHYRAQHREFFPNDMPES----- 273
           +NH + D    Y  P   P         P +  T+   +Y + H +F+ ++  ++     
Sbjct: 388 NNHYNGDPN--YISPEVFPNTNNAIMTPPASVQTESSDNYNSFH-QFYSSESSQNQVAPT 444

Query: 274 --NTNGRLLWDFLQQLLNDPTQRY 295
             N+N    ++FL  L ND T  Y
Sbjct: 445 GENSNSSSDFNFLSNLANDYTPEY 468


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 197 TVTYAPAYAPSVPPTTQAASSGSNHSDSDEEGQYAPPPRSPKEAPITSPAPQNHPTQQHP 256
           +V+ +P   P+   T+Q  SS ++ + S    + A    +  ++  +S  PQ +P  +  
Sbjct: 148 SVSTSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIYPWMKRV 207

Query: 257 H 257
           H
Sbjct: 208 H 208



 Score = 23.0 bits (47), Expect = 4.7
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 185 SVDSSGSPQRGDTVTYAPAYAPSVPPTTQAASSGSNHSDSDEEGQYAPPPRSP 237
           S    G P    T     + A S   T+    +G+N+++S       PP   P
Sbjct: 150 STSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIYP 202


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 179 TLSPAPSVDSSGSPQRGDTVTYAPAYAPSVPPTTQAASSGSNHSDSDEEGQYAP-----P 233
           T SP     S  SP         P   P+ P T+ +  + +   +S +   Y P     P
Sbjct: 198 TTSPTKVKASKASPAAAPRSVATPTGIPT-PSTSASPPTVNIKKESPQMQSYRPTGNITP 256

Query: 234 PRSPKEAPITSPAPQNHPTQQHPHYRA 260
             S   + IT+P+P   P      Y +
Sbjct: 257 HGSNTSSLITTPSPSASPLAYQHEYNS 283


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 177 SVTLSPAPSVDSSGSPQRGDTVTYAPAYAPSVPPTTQAASSGSNHSDSDEEGQYAPPPRS 236
           +++L    S+ S G+PQ    +   P  +     + Q  +S  + S        +P   +
Sbjct: 7   ALSLDQNLSMGSLGAPQ--SPLDMKPDASTLGQFSPQGPNSPVSFSMGGHGSLLSPSGNT 64

Query: 237 PKEAPITSPAPQNHPTQQHPH 257
           P ++  TSP P NHP     H
Sbjct: 65  PNKSS-TSPYPPNHPLSGSKH 84


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 230 YAPPPRSPKEAPITSPAPQNHPTQQ 254
           + P  +SP+ AP  S  P + PTQ+
Sbjct: 64  FHPWKKSPQGAPSPSSTPSSLPTQR 88


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 177 SVTLSPAPSVDSSGSPQRGDTVTYAPAYAPS 207
           S   +P P+  SSGSP    +   AP + P+
Sbjct: 29  SPAAAPPPATTSSGSPASVASNASAPLHIPA 59


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 226 EEGQYAPPPRSPKEAPITSPAPQNHPTQQHPHYRAQHREFFPNDMPES 273
           E   +  P R+PKEA   SP  +    +   +  AQ + +  N  P +
Sbjct: 244 EAFDFYTPARNPKEADYPSPLYELVDRRNDENIDAQVKYWMSNGAPSA 291


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 248 QNHPTQQHPHYRAQH 262
           + HP    PH++ QH
Sbjct: 173 EQHPQHHQPHHQQQH 187


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 248 QNHPTQQHPHYRAQH 262
           + HP    PH++ QH
Sbjct: 175 EQHPQHHQPHHQQQH 189


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 184 PSVDSSGSPQRGDTVTY 200
           P V  S +PQ G T TY
Sbjct: 174 PQVQWSATPQAGSTPTY 190


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,146
Number of Sequences: 317
Number of extensions: 5192
Number of successful extensions: 24
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 19
length of query: 476
length of database: 114,650
effective HSP length: 59
effective length of query: 417
effective length of database: 95,947
effective search space: 40009899
effective search space used: 40009899
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)