GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001166-TA|BGIBMGA001166-PA|IPR002110|Ankyrin,
IPR005821|Ion transport
         (943 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   1.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   6.7  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 101 FAVENGNIDALAALLEDDRIDVNVKSRGNTAILMAVKQ---IEE--LDDAREHELTIYED 155
           +AVEN    +L  L++      + K+ GN  I M  K+    EE  +D   E+E     D
Sbjct: 122 YAVENNTGSSLCDLVQGLERLFDEKNAGNNKITMKSKKEQNAEEDIVDPVEENETYDEFD 181

Query: 156 MIELLLKAGCNANSPDLKGVTPIYSAAKQGLERVITLIIDYAK-HAIDIDTYKDRRGK 212
            I + +    + + P+ +G+       K  + R  +L    A    I + T++ +R K
Sbjct: 182 TIRIPIVRSLSKSPPNDEGIETDSDRRKGSIARCWSLDSTAASDEDISLTTHQQKRHK 239


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 333 MDNESTLFDPVNSESLVQITIKGRRSSINIPNVNFDE 369
           +DN +T     +S++   +T+    S++NIP+V  DE
Sbjct: 365 LDNTNTNDQDYSSQNY--LTVHSFPSTLNIPSVKIDE 399


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,165
Number of Sequences: 429
Number of extensions: 11654
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 2
length of query: 943
length of database: 140,377
effective HSP length: 64
effective length of query: 879
effective length of database: 112,921
effective search space: 99257559
effective search space used: 99257559
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)