Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001165-TA|BGIBMGA001165-PA|IPR001401|Dynamin,
IPR000375|Dynamin central region, IPR003130|Dynamin GTPase effector
         (612 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    26   0.66 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    26   0.66 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   1.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   8.1  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 389 REAALVSGLLKSGDD-DHSPVYRHKTPRPSPS 419
           R++ L++GL  SG    H P  + K PRP+P+
Sbjct: 233 RKSELLAGLQSSGSSRSHQPATKSK-PRPAPA 263


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 340 MLRFPRLHQRIVDVVTQ--LLRTRLPPTNSMVENLVAIELAYINTK 383
           ML F  +HQ     V    +L+TR    N+++ENL A +L  +  K
Sbjct: 177 MLSFLMVHQGETQFVAANVILKTRFKTINNILENLWAKKLIVVKDK 222


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 135  YSTTVVNLTLVDL-PGDQPEDIENQIRNLIIKYISNPNSIILAVTAANTDMATSEAIKLA 193
            Y   V++ + + L P D   DI+N+    ++ Y S    +++A+   N D A ++  +L 
Sbjct: 2355 YGFAVLDSSSMTLKPHDSWADIDNEFYKKVVSYKSRGVKVLIALGGWN-DSAGNKYSRLV 2413

Query: 194  KDVDPDGRRTLAVVTKLDLMDAGTDAIDI 222
               DP  R          + +   D +D+
Sbjct: 2414 N--DPQARAAFIAHVLAFIEEWNFDGLDL 2440


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 409 YRHKTPRPSPSPVSNLIKLFLRQMGERGSALVF 441
           Y +      P PVS   K+ L   G  G+AL F
Sbjct: 94  YSYANGAAGPIPVSMASKMGLAPTGHPGAALPF 126


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,151
Number of Sequences: 317
Number of extensions: 5689
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 5
length of query: 612
length of database: 114,650
effective HSP length: 61
effective length of query: 551
effective length of database: 95,313
effective search space: 52517463
effective search space used: 52517463
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)