Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001165-TA|BGIBMGA001165-PA|IPR001401|Dynamin,
IPR000375|Dynamin central region, IPR003130|Dynamin GTPase effector
         (612 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    27   0.34 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    27   0.34 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   1.8  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          25   1.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   2.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   5.5  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 27.5 bits (58), Expect = 0.34
 Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 18/159 (11%)

Query: 26  PQIAVLGTQSSGKSSVIESLVGRSFLPRGPGI----------VTRRPLILQLVYSPQEGK 75
           P I +LG  S  K+ V+ +L+    LP   G+               L L L Y   E  
Sbjct: 27  PAIIILGQDSKAKAIVVNTLISNDILPVCNGLWRWIRLTYGQTNHISLTLDLEYELVENL 86

Query: 76  EHRSAEEGTLNLEEWGKFLHTKDKIYTNFEEIRQEIERETDRMAGSNKGISPEPINLKIY 135
           +       TL +E+  K    +D  Y    E++  +    D   G    I+P    +K+ 
Sbjct: 87  QANEKPWSTLPIEDLTK-SDNEDITYPTVLEVQLNLPILKD---GVQIFIAPNNGAVKVL 142

Query: 136 STTVVNLTLVDL--PGDQPEDIEN--QIRNLIIKYISNP 170
           +   +++  + L   G+QP   +N  ++R+L   Y  NP
Sbjct: 143 ANEFLSILPIFLYALGEQPLTEQNLEELRDLKETYPFNP 181


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 27.5 bits (58), Expect = 0.34
 Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 18/159 (11%)

Query: 26  PQIAVLGTQSSGKSSVIESLVGRSFLPRGPGI----------VTRRPLILQLVYSPQEGK 75
           P I +LG  S  K+ V+ +L+    LP   G+               L L L Y   E  
Sbjct: 65  PAIIILGQDSKAKAIVVNTLISNDILPVCNGLWRWIRLTYGQTNHISLTLDLEYELVENL 124

Query: 76  EHRSAEEGTLNLEEWGKFLHTKDKIYTNFEEIRQEIERETDRMAGSNKGISPEPINLKIY 135
           +       TL +E+  K    +D  Y    E++  +    D   G    I+P    +K+ 
Sbjct: 125 QANEKPWSTLPIEDLTK-SDNEDITYPTVLEVQLNLPILKD---GVQIFIAPNNGAVKVL 180

Query: 136 STTVVNLTLVDL--PGDQPEDIEN--QIRNLIIKYISNP 170
           +   +++  + L   G+QP   +N  ++R+L   Y  NP
Sbjct: 181 ANEFLSILPIFLYALGEQPLTEQNLEELRDLKETYPFNP 219


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 539 QDSVPKAVMHFLVNFVKDNLQSELVTHLYKS-DQAESMLNESEHIAQRRKEAADMLKALQ 597
           ++++PK     L NF   +++S  V  L    D  ESMLN    I    K    M+KA Q
Sbjct: 432 KENLPKYTTEEL-NFPGVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQ 490


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 539 QDSVPKAVMHFLVNFVKDNLQSELVTHLYKS-DQAESMLNESEHIAQRRKEAADMLKALQ 597
           ++++PK     L NF   +++S  V  L    D  ESMLN    I    K    M+KA Q
Sbjct: 58  KENLPKYTTEEL-NFPGVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQ 116


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 388 HREAALVSGLLKSGDDDHSPVYRHKTPRPSPSP 420
           HR  A  SG   SGDD+       KTP+P   P
Sbjct: 538 HRRRAN-SGSTSSGDDELHRASLSKTPQPPQCP 569


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 476 TSRKLSEREQHDCDVIGGRSDNTTVLNSNVKTVDGI----NVMQLNQMGDLVERLIKSYF 531
           T RK  E   HD  +IGG +   T     + ++ GI    +  +L +      RLI S F
Sbjct: 250 TIRKCDESSPHDQVIIGGSNGLDTSKVHIIDSICGIDSKPDYRELTEYSVTSVRLISSGF 309

Query: 532 Y 532
           +
Sbjct: 310 F 310


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,400
Number of Sequences: 429
Number of extensions: 6792
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 612
length of database: 140,377
effective HSP length: 62
effective length of query: 550
effective length of database: 113,779
effective search space: 62578450
effective search space used: 62578450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)