Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001165-TA|BGIBMGA001165-PA|IPR001401|Dynamin,
IPR000375|Dynamin central region, IPR003130|Dynamin GTPase effector
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 296 7e-81
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 292 8e-80
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 158 2e-39
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 33 0.15
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 33 0.15
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 31 0.62
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr... 29 1.4
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 29 1.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 2.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 2.5
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 29 2.5
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 28 3.3
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 28 3.3
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 28 4.4
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 27 7.6
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 7.6
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 27 7.6
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 7.6
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 27 7.6
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 7.6
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 27 7.6
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 296 bits (726), Expect = 7e-81
Identities = 161/305 (52%), Positives = 212/305 (69%), Gaps = 33/305 (10%)
Query: 1 MEALIPVINKLQD-VFNTVGADAIQLPQIAVLGTQSSGKSSVIESLVGRSFLPRGPGIVT 59
ME LIP++N+LQD V+NT+G+D + LP I V+G+QS GKSSV+E++VG+ FLPRG GIVT
Sbjct: 1 MEQLIPLVNQLQDLVYNTIGSDFLDLPSIVVVGSQSCGKSSVLENIVGKDFLPRGTGIVT 60
Query: 60 RRPLILQLVYSPQEGK-------------EHRSA----------EEGTLNLEEWGKFLHT 96
RRPLILQL+ ++ K E SA EE + +E++ +FLH
Sbjct: 61 RRPLILQLINLKRKTKNNHDEESTSDNNSEETSAAGETGSLEGIEEDSDEIEDYAEFLHI 120
Query: 97 KDKIYTNFEEIRQEIERETDRMAGSNKGISPEPINLKIYSTTVVNLTLVDLPG------- 149
D +T+ ++R EIE ET R+AG+NKGI+ PINLKIYST V+NLTL+DLPG
Sbjct: 121 PDTKFTDMNKVRAEIENETLRVAGANKGINKLPINLKIYSTRVLNLTLIDLPGLTKIPVG 180
Query: 150 DQPEDIENQIRNLIIKYISNPNSIILAVTAANTDMATSEAIKLAKDVDPDGRRTLAVVTK 209
DQP DIE Q R+LI++YIS PNSIILAV+ AN D+ SE +KLA+ VDP G+RT+ V+TK
Sbjct: 181 DQPTDIEAQTRSLIMEYISRPNSIILAVSPANFDIVNSEGLKLARSVDPKGKRTIGVLTK 240
Query: 210 LDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDKKTITDALKDEATYLQR--KYP 267
LDLMD GT+A+DIL GRV P+KLG + VNRSQ DI+ K++ DAL+ E ++ + Y
Sbjct: 241 LDLMDQGTNAMDILSGRVYPLKLGFVATVNRSQSDIVSHKSMRDALQSERSFFEHHPAYR 300
Query: 268 TIATR 272
TI R
Sbjct: 301 TIKDR 305
Score = 111 bits (268), Expect = 2e-25
Identities = 55/115 (47%), Positives = 78/115 (67%), Gaps = 3/115 (2%)
Query: 273 LTRMDILTAIRNATGPRPALFVPEVSFELLVKRQIRRLEDPSLRCVELVHEEMQRIVQHC 332
L+ +DI TAI N+TG R LF+ E++F++LVK Q+ L P +CVELV+EE+ +I +
Sbjct: 417 LSTVDIRTAILNSTGSRATLFLSEMAFDILVKPQLNLLAAPCHQCVELVYEELMKICHYS 476
Query: 333 GTEVQQEMLRFPRLHQRIVDVVTQLLRTRLPPTNSMVENLVAIELAYINTKHPDF 387
G ++ FP+L +V+ V+ LLR L PT S VE+L+AI+ AYINT HPDF
Sbjct: 477 G---DSDISHFPKLQTALVETVSDLLRENLTPTYSFVESLIAIQSAYINTNHPDF 528
Score = 77.8 bits (183), Expect = 4e-15
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 499 TVLNSNVKTVDGINVMQLNQMG-DLVERLIKSYFYIVRKSIQDSVPKAVMHFLVNFVKDN 557
T L++ V+T+ ++ + ++ DL++ LI SYF + RK I D VPK +MH LVN KD
Sbjct: 672 TDLSNEVETMALEDMSEREEVEVDLIKELITSYFNLTRKIIIDQVPKVIMHLLVNASKDA 731
Query: 558 LQSELVTHLYKSDQAESMLNESEHIAQRRKEAADMLKALQRAGQIISEI 606
+Q+ LV+ LY+ D +++L E E++ R++ +L +A +IIS +
Sbjct: 732 IQNRLVSKLYREDFFDTLLIEDENVKSEREKCERLLSVYNQANKIISTV 780
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 292 bits (717), Expect = 8e-80
Identities = 150/274 (54%), Positives = 196/274 (71%), Gaps = 13/274 (4%)
Query: 3 ALIPVINKLQDVFNTVGA-DAIQLPQIAVLGTQSSGKSSVIESLVGRSFLPRGPGIVTRR 61
+LI V+N+LQ+ F+TVG + I LPQI V+ +QSSGKSSV+E++VGR FLPRG GIVTRR
Sbjct: 4 SLIKVVNQLQEAFSTVGVQNLIDLPQITVVRSQSSGKSSVLENIVGRDFLPRGTGIVTRR 63
Query: 62 PLILQLVYSPQ-EGKEHRSAEEGT----LNLEEWGKFLHTKDKIYTNFEEIRQEIERETD 116
PL+LQL+ P GK + + N EWG+FLH + + FE+IR+EI RET+
Sbjct: 64 PLVLQLINRPSASGKNEETTTDSDGKDQNNSSEWGEFLHLPGQKFFEFEKIREEIVRETE 123
Query: 117 RMAGSNKGISPEPINLKIYSTTVVNLTLVDLPG-------DQPEDIENQIRNLIIKYISN 169
G N GIS PI L+IYS V+ LTLVDLPG DQP DIE QIR +++KYIS
Sbjct: 124 EKTGKNVGISSVPIYLRIYSPHVLTLTLVDLPGLTKVPVGDQPRDIEKQIREMVLKYISK 183
Query: 170 PNSIILAVTAANTDMATSEAIKLAKDVDPDGRRTLAVVTKLDLMDAGTDAIDILCGRVIP 229
N+IILAV AANTD+A S+ +KLA++VDP+G RT+ V+TK+DLMD GTD +DIL GRVIP
Sbjct: 184 NNAIILAVNAANTDLANSDGLKLAREVDPEGLRTIGVLTKVDLMDKGTDVVDILAGRVIP 243
Query: 230 VKLGIIGVVNRSQQDIIDKKTITDALKDEATYLQ 263
++LG + V+NR Q+DI KK+I AL+ E + +
Sbjct: 244 LRLGYVPVINRGQKDIEGKKSIRIALEAERNFFE 277
Score = 103 bits (247), Expect = 7e-23
Identities = 53/122 (43%), Positives = 82/122 (67%), Gaps = 7/122 (5%)
Query: 277 DILTAIRNATGPRPALFVPEVSFELLVKRQIRRLEDPSLRCVELVHEEMQRIVQHCGTEV 336
DI T + N++GP P+LF+ +FE++VK+QI+RLEDPSL+CV L+++E+ RI+ +
Sbjct: 401 DIRTILYNSSGPSPSLFMGTAAFEVIVKQQIKRLEDPSLKCVSLIYDELVRILNQL---L 457
Query: 337 QQEML-RFPRLHQRIVDVVTQLLRTRLPPTNSMVENLVAIELAYINTKHPDF---HREAA 392
Q+ + R+P L VV R + PTN++V ++VA+E +YINT HPDF H+ A
Sbjct: 458 QRPIFKRYPLLKDEFYKVVIGFFRKCMQPTNTLVMDMVAMEGSYINTVHPDFLSGHQAMA 517
Query: 393 LV 394
+V
Sbjct: 518 IV 519
Score = 75.8 bits (178), Expect = 2e-14
Identities = 33/86 (38%), Positives = 59/86 (68%)
Query: 521 DLVERLIKSYFYIVRKSIQDSVPKAVMHFLVNFVKDNLQSELVTHLYKSDQAESMLNESE 580
++++ LI SYF IV++++ D VPK++ ++ + K+++Q EL+ LYKS + +L ESE
Sbjct: 593 EVIKLLIMSYFNIVKRTLADMVPKSISLKMIKYSKEHIQHELLEQLYKSQAFDKLLQESE 652
Query: 581 HIAQRRKEAADMLKALQRAGQIISEI 606
QRRKE M+++L +A +I+S +
Sbjct: 653 VTVQRRKECEQMVESLLQASEIVSNV 678
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 158 bits (383), Expect = 2e-39
Identities = 101/244 (41%), Positives = 146/244 (59%), Gaps = 25/244 (10%)
Query: 4 LIPVINKLQDVFNTVGADAIQLPQIAVLGTQSSGKSSVIESLVGRSFLPRGPGIVTRRPL 63
+I + N LQD+ + A+ LP I V+G+QSSGKSSV+E++VG FLP+G +VTRRP+
Sbjct: 244 MIEIRNILQDIQDN--NSAVTLPSIVVIGSQSSGKSSVLEAIVGHEFLPKGSNMVTRRPI 301
Query: 64 ILQLVYSPQEGKEHRSAEEGTLNLEEWGKFLHTKDKIYTNFEEIRQEIERETDRMAGSNK 123
L LV+S + G + + GK T+F +I Q I + + S++
Sbjct: 302 ELTLVHSADTAIPY-----GEFSGVQLGKI--------TDFSKI-QHILTDLNMAVPSSQ 347
Query: 124 GISPEPINLKIYSTTVVNLTLVDLPG-------DQPEDIENQIRNLIIKYISNPNSIILA 176
G+ PI L IY++ + NL+L+DLPG DQP D++ +I L KYI PN IILA
Sbjct: 348 GVDDNPIRLTIYASHIPNLSLIDLPGYIQIHSEDQPADLDMKISKLCEKYIREPN-IILA 406
Query: 177 VTAANTDMATSEAIKLAKDVDPDGRRTLAVVTKLDLMDAGTDAIDILCGRVIPVKLGIIG 236
V AA+ D+A S A++ ++ VDP G RT+ VVTK+DL+ + AI IL P+ G IG
Sbjct: 407 VCAADVDLANSAALRASRRVDPLGLRTIGVVTKMDLVPP-SKAISILHNNNYPLHYGYIG 465
Query: 237 VVNR 240
V++R
Sbjct: 466 VISR 469
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 32.7 bits (71), Expect = 0.15
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 9 NKLQDVFNTVGA-DA-IQLPQIAVLGTQSSGKSSVIESLVGRSF 50
N+L +VG DA +AVLG+QS+GKS+++ +L G SF
Sbjct: 21 NELPKFMQSVGLLDAGFNYHVVAVLGSQSTGKSTLLNNLFGTSF 64
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 32.7 bits (71), Expect = 0.15
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 347 HQRIVDVVTQLLRTRLPPTNSM-VENLVAIELAYINTKHPDFHREAA--LVSGLLKSGDD 403
H V++ +++ P ++ ++NL A A + TKHPD+ AA VS L K +
Sbjct: 33 HVDPVEITQKVISGVYPGVTTIELDNLAAETAATMTTKHPDYAILAARIAVSNLHKQTEK 92
Query: 404 DHSPVYRH-------KTPRPSPSPVSNLIKLFLRQMGERGSALVF 441
S V + KT +P+P + + ++ E SA+++
Sbjct: 93 VFSTVVQQLHDYVNPKTDKPAPMISDKIYDIVMKHKDELDSAIIY 137
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 30.7 bits (66), Expect = 0.62
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 148 PGDQPEDIENQIRNLIIKYISNPNSIILAVTAANTDMATSEAIKLAKDVDPDGRRT 203
P +P D+E I NL+ KYI NP +I+ V + + T+ A +++ DG ++
Sbjct: 106 PQLRPSDLE--INNLLKKYIPNPVLVIIDVKPKSVGLPTN-AYFAIDEIEDDGSKS 158
>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 65 LQLVYSPQEGKEHRSAEEGTLNLEEW-GKF----LHTKDKIY 101
L+ P+ K ++S +EG LNLE + G F LH ++K+Y
Sbjct: 29 LERAQFPRNEKVYKSGKEGCLNLENYDGSFLNYLLHEEEKVY 70
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 29.1 bits (62), Expect = 1.9
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 465 PVNLLPEVPIQTSRKLSEREQHDCDVIGGRSDNTTVLNSNVKTVDGINVMQLNQMGDLVE 524
P+ + + +Q + +LS Q + + +G T N+ T ++Q + L+
Sbjct: 297 PIEIFDDQRVQLALRLSALAQKNNERVGHILPRNTEACPNLYT-RFFKLVQSPAVTYLMA 355
Query: 525 RLIKSYFYIVRKSIQDSVPKAVMHFLVNFVKDNLQSELVTHLYKSDQAES 574
L++S+F +RK ++ KA M NF +L+ + H +QA S
Sbjct: 356 CLLESHFMSIRKGALKAMRKAFMSAHANFPCGDLKR--ILHFDTVEQAAS 403
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.7 bits (61), Expect = 2.5
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 5/136 (3%)
Query: 34 QSSGKSSVIESLVGRSFLPRGPGIVTRRPLILQLVYSPQEGKEHRSAEEGTLNLEEWGKF 93
++ GK +E+ + R+ L +R ++ Y P G E EEG +
Sbjct: 255 RTHGKVIKLENCIRRTALQTVKNKYAQRCQFFKVDYVPLNGGEEEEEEEGEEKEDAQNIK 314
Query: 94 LHTKDKIYTNFEEIRQEIERETDRMAGSNKGISPEPINLKIYSTTVVNLTLVDLPGDQPE 153
D ++ F E Q+ + D+ G NK + ++ + T N L D D E
Sbjct: 315 ERMVDFCFSKFMEKNQQRREQQDK--GENKK-RQDDVDQATDNNT--NTILEDDEKDNDE 369
Query: 154 DIENQIRNLIIKYISN 169
+ E +I N K + N
Sbjct: 370 EEEEEIVNAREKNLLN 385
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 28.7 bits (61), Expect = 2.5
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 5/136 (3%)
Query: 34 QSSGKSSVIESLVGRSFLPRGPGIVTRRPLILQLVYSPQEGKEHRSAEEGTLNLEEWGKF 93
++ GK +E+ + R+ L +R ++ Y P G E EEG +
Sbjct: 255 RTHGKVIKLENCIRRTALQTVKNKYAQRCQFFKVDYVPLNGGEEEEEEEGEEKEDAQNIK 314
Query: 94 LHTKDKIYTNFEEIRQEIERETDRMAGSNKGISPEPINLKIYSTTVVNLTLVDLPGDQPE 153
D ++ F E Q+ + D+ G NK + ++ + T N L D D E
Sbjct: 315 ERMVDFCFSKFMEKNQQRREQQDK--GENKK-RQDDVDQATDNNT--NTILEDDEKDNDE 369
Query: 154 DIENQIRNLIIKYISN 169
+ E +I N K + N
Sbjct: 370 EEEEEIVNAREKNLLN 385
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 1 MEALIPVINKLQDVFNTVGADAIQLPQIAVL 31
+ A++PVI++L D N+VG + LP+ L
Sbjct: 681 ISAIVPVISRLYDSMNSVGDGSQALPKYVAL 711
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 361 RLPPTNSMVENLVAIELAYINTKHPDFHREAALV 394
RLPP +E L A+ LA+IN + +F +A +
Sbjct: 327 RLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYI 360
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 28.3 bits (60), Expect = 3.3
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 338 QEMLRFPRLHQRIVDVVTQLLRTRLPPTNSMVENLVAIELAYINTKHPDFHREAALVSGL 397
Q +L++P L Q+I+DV + R P + L+ ++ IN K H+ +L +
Sbjct: 464 QRLLKYPLLLQKIIDVTPESSSER--PDLVLSYQLLQELISGINQKQKPSHKRGSLSAS- 520
Query: 398 LKSGDDDHSPVYRHKTPRPSPSPVSNLIK 426
D S +Y+ + + P+ S +K
Sbjct: 521 -HKRDAAWSLLYKATSNKSRPTTTSTELK 548
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 513 VMQLNQMGDLVERLIKSYFYIVRKSIQDSVPKAVMHFLVNFVKDNLQSELVTHLYKSDQA 572
V N + + + KS+FYI ++S DS K + L + +L S L HL S+
Sbjct: 488 VCAANDDDEFAQTVCKSFFYISKESGTDSALKFLYKCLNSDSSADLYSLLEEHLPLSEHD 547
Query: 573 ESML 576
+ L
Sbjct: 548 DDTL 551
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 519 MGDLVERLIKSYFYIVRKSIQDSVPKAVMHFL---VNFVKDNLQSELVTHLYKSDQAESM 575
MG + + +I + SIQ + H+ +N+ K L+ ++ +L+K A +
Sbjct: 169 MGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQPWAHGL 228
Query: 576 LNESEHIAQRRKEAA-DMLKAL 596
L E+ + A + A+ D +K+L
Sbjct: 229 LLENFNSAAEKNHASIDKMKSL 250
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 549 FLVNFVKDNLQSELVTHLYKSDQAE 573
F +N+ + LQ E H++K +Q E
Sbjct: 472 FCINYANEKLQQEFYRHVFKLEQEE 496
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 7.6
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 331 HCGTEVQQEMLRFPRLHQRIVDVVTQLLRTRLPPTNSMVENLVAIELAYINTKHPDFHRE 390
+ T+ ++ P+L Q R P T+S+ E V + A ++ + +
Sbjct: 209 NASTDTRKSTASTPQLQQTQAQANAPQQRIN-PETSSVPETPVGVSAANVSNESTELATS 267
Query: 391 AALVSGLLKSGDDDHSPVY---RHKTPRPSPSPV 421
A SGL + + +P Y H S SP+
Sbjct: 268 ATQQSGLANNVEKSQTPSYMSANHLPKVDSKSPI 301
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 442 LASVLDAYKINGMPD--NKALTPQKPVNLLPE-VPIQTSRKLSEREQHDCDVIGGRSDNT 498
L+S+L ++ P N AL ++ V P V + ++ E+HD D GG+ D+
Sbjct: 1339 LSSMLKGGSVSRTPSRQNSALRREQSVRAPPSNVAVTSANSFELLEEHDHDNDGGQKDSN 1398
Query: 499 TVLNS 503
+ +S
Sbjct: 1399 SKTSS 1403
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 28 IAVLGTQSSGKSSVIESLVGRSFLPRGPGIVTRRPLILQLV 68
+A+LG ++GKSS+I L R P T R I LV
Sbjct: 242 VAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIEVLV 282
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 27 QIAVLGTQSSGKSSVIESLVGRSFLPRGPGIVTRRPLILQLVYSPQEGKEH 77
++A+LG +GKS++I+ L+G +P+ G V + P L++ Y Q H
Sbjct: 721 RVAILGPNGAGKSTLIKVLIG-EVIPQ-EGKVFKHP-NLRVGYVAQHAFHH 768
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 568 KSDQAESMLNESEHIAQRRKEAADMLKALQRAG 600
KSDQ E MLN + +R+ D+ + ++G
Sbjct: 449 KSDQRERMLNVDQCFTSKRRSLVDIESTINQSG 481
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,766
Number of Sequences: 5004
Number of extensions: 115072
Number of successful extensions: 443
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 29
length of query: 612
length of database: 2,362,478
effective HSP length: 77
effective length of query: 535
effective length of database: 1,977,170
effective search space: 1057785950
effective search space used: 1057785950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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