Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001165-TA|BGIBMGA001165-PA|IPR001401|Dynamin,
IPR000375|Dynamin central region, IPR003130|Dynamin GTPase effector
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.) 278 8e-75
SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0) 276 3e-74
SB_20156| Best HMM Match : GED (HMM E-Value=6.8e-16) 44 3e-04
SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082) 36 0.13
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18) 35 0.22
SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.67
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 33 0.89
SB_56681| Best HMM Match : adh_short (HMM E-Value=0.035) 32 1.6
SB_23766| Best HMM Match : 4_1_CTD (HMM E-Value=1.1) 32 1.6
SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023) 32 1.6
SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05) 31 2.7
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.7
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.7
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.3
>SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 278 bits (682), Expect = 8e-75
Identities = 137/191 (71%), Positives = 161/191 (84%), Gaps = 7/191 (3%)
Query: 89 EWGKFLHTKDKIYTNFEEIRQEIERETDRMAGSNKGISPEPINLKIYSTTVVNLTLVDLP 148
EWGKFLH K+KI+ +F IR+EIERETDR+ GSNKGIS EPINLKIYS V+NLTLVDLP
Sbjct: 140 EWGKFLHLKEKIFRDFNGIREEIERETDRVTGSNKGISSEPINLKIYSPKVLNLTLVDLP 199
Query: 149 G-------DQPEDIENQIRNLIIKYISNPNSIILAVTAANTDMATSEAIKLAKDVDPDGR 201
G DQP DIE QIR+LI++YISNPNSIILAVT AN D+ATSEA+K+A++VDPDG
Sbjct: 200 GVTKVPVGDQPLDIEQQIRHLILQYISNPNSIILAVTPANIDLATSEALKIAREVDPDGH 259
Query: 202 RTLAVVTKLDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDKKTITDALKDEATY 261
RTLAV TKLDLMD GTDA+D+L GRVIPVKLGIIGVVNRSQ DI ++K+I +AL+DEA +
Sbjct: 260 RTLAVCTKLDLMDHGTDAMDVLYGRVIPVKLGIIGVVNRSQLDINNRKSIENALRDEAGF 319
Query: 262 LQRKYPTIATR 272
R YPT+A+R
Sbjct: 320 FARNYPTVASR 330
Score = 191 bits (466), Expect = 1e-48
Identities = 95/132 (71%), Positives = 109/132 (82%), Gaps = 1/132 (0%)
Query: 273 LTRMDILTAIRNATGPRPALFVPEVSFELLVKRQIRRLEDPSLRCVELVHEEMQRIVQHC 332
L+ DILTAIRNATGPRPALFVPE+SFELLVKRQIRRLE+PSLRC+ELVHEEMQRI+QH
Sbjct: 438 LSTRDILTAIRNATGPRPALFVPEISFELLVKRQIRRLEEPSLRCIELVHEEMQRIIQHS 497
Query: 333 GTEVQQEMLRFPRLHQRIVDVVTQLLRTRLPPTNSMVENLVAIELAYINTKHPDFHREAA 392
+V E+ RFPRLH+ IVDV+ LL+ RL P N MVENLVAIELAYINT HPDF A+
Sbjct: 498 FDQV-MEIKRFPRLHESIVDVIINLLQRRLMPCNEMVENLVAIELAYINTNHPDFTDGAS 556
Query: 393 LVSGLLKSGDDD 404
LVS L+ + + D
Sbjct: 557 LVSSLVANQELD 568
Score = 138 bits (333), Expect = 2e-32
Identities = 64/92 (69%), Positives = 82/92 (89%)
Query: 521 DLVERLIKSYFYIVRKSIQDSVPKAVMHFLVNFVKDNLQSELVTHLYKSDQAESMLNESE 580
D++ +LIKSYF IVRKSIQDSVPKA+M FLVN+VK+ +QSELV LYKS++ E++L ESE
Sbjct: 791 DIIRKLIKSYFVIVRKSIQDSVPKAIMAFLVNYVKERIQSELVEKLYKSERFETLLQESE 850
Query: 581 HIAQRRKEAADMLKALQRAGQIISEIRETHMW 612
H+ +RKEAA+MLKALQRAGQIISE+R+TH++
Sbjct: 851 HMHIKRKEAAEMLKALQRAGQIISEVRDTHIY 882
Score = 69.7 bits (163), Expect = 6e-12
Identities = 47/102 (46%), Positives = 57/102 (55%), Gaps = 23/102 (22%)
Query: 1 MEALIPVINKLQDVFNTVGADAIQLPQIAVLGTQ---------------------SSGKS 39
ME LIPVINKLQDVFNTVG+++IQLPQI V+G Q +
Sbjct: 1 MEQLIPVINKLQDVFNTVGSESIQLPQIVVVGAQFIYFRLYAFLSMMQMAENENIARHTG 60
Query: 40 SVIESLVGRSFLPRGPGIVTRRPLILQLVYSPQEGKEHRSAE 81
++ S FL G G+VTRRPLILQLV+ P KE + E
Sbjct: 61 TLTNSHTKEMFL--GSGVVTRRPLILQLVHVPPRAKEKKINE 100
>SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0)
Length = 498
Score = 276 bits (677), Expect = 3e-74
Identities = 145/269 (53%), Positives = 196/269 (72%), Gaps = 24/269 (8%)
Query: 1 MEALIPVINKLQDVFNTVG-ADAIQLPQIAVLGTQSSGKSSVIESLVGRSFLPRGPGIVT 59
ME LIP++NK+QD F ++G + I LPQIAV+G+QS+GKSSV+E+ VG+ FLPRG GIVT
Sbjct: 6 MEDLIPIVNKIQDAFASIGYSSMIDLPQIAVVGSQSAGKSSVLENFVGKDFLPRGSGIVT 65
Query: 60 RRPLILQLVYSPQEGKEHRSAEEGTLNLEEWGKFLHTKDKIYTNFEEIRQEIERETDRMA 119
RRPLILQL Q K E+ +FLH ++K +T+F E+++EI ETDR+
Sbjct: 66 RRPLILQL----QPSKS------------EYAEFLHCRNKKFTDFGEVQKEIVAETDRVT 109
Query: 120 GSNKGISPEPINLKIYSTTVVNLTLVDLPG-------DQPEDIENQIRNLIIKYISNPNS 172
G NKGIS PINL++YS +V++LTLVDLPG DQP DIE QIR++++++I+ N
Sbjct: 110 GGNKGISNIPINLRVYSPSVLSLTLVDLPGMTKVPVGDQPADIEFQIRSMLLEFITKENC 169
Query: 173 IILAVTAANTDMATSEAIKLAKDVDPDGRRTLAVVTKLDLMDAGTDAIDILCGRVIPVKL 232
+ILAV+ AN+D+A S+A+K+A++VDP G RT+ V+TKLDLMD GTDA DIL RV+P++
Sbjct: 170 LILAVSPANSDLANSDALKIAREVDPQGARTIGVITKLDLMDEGTDARDILENRVLPLRR 229
Query: 233 GIIGVVNRSQQDIIDKKTITDALKDEATY 261
G IG+VNRSQ DI +K I AL E +
Sbjct: 230 GYIGIVNRSQADIDGRKDIRAALAAERKF 258
Score = 97.9 bits (233), Expect = 2e-20
Identities = 44/113 (38%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Query: 275 RMDILTAIRNATGPRPALFVPEVSFELLVKRQIRRLEDPSLRCVELVHEEMQRIVQHCGT 334
R +I+ AI+N G R LF P+++FE +VKRQI +L P+++CV++V E+ ++Q C T
Sbjct: 385 RREIMFAIKNIHGIRVGLFTPDMAFEAIVKRQIDKLRSPAIKCVDMVMTELTSVIQKCAT 444
Query: 335 EVQQEMLRFPRLHQRIVDVVTQLLRTRLPPTNSMVENLVAIELAYINTKHPDF 387
+M ++P L ++ +V +R+ T V+ + +ELAYINT HPDF
Sbjct: 445 ----QMAKYPLLRDQVERIVIDHIRSNEVTTKEQVQTFIELELAYINTNHPDF 493
>SB_20156| Best HMM Match : GED (HMM E-Value=6.8e-16)
Length = 172
Score = 44.4 bits (100), Expect = 3e-04
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 20/96 (20%)
Query: 515 QLNQMGDLVERLIKSYFYIVRKSIQDSVPKAVMHFLVNFVKDNLQSELVTHLYKSDQAES 574
Q+ + + + L+ SY IV K+I+D VPK +M+ ++N SD
Sbjct: 54 QMERQVETIRNLVDSYIRIVSKTIRDLVPKTIMYMIIN---------------NSD---- 94
Query: 575 MLNESEHIAQRRKEAADMLKALQRAGQIISEIRETH 610
++ ESE AQRR+E M + + A QI+ +I +TH
Sbjct: 95 LMEESEEEAQRREEMLKMYHSTKEALQIVGDI-DTH 129
>SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)
Length = 478
Score = 35.5 bits (78), Expect = 0.13
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 92 KFLHTKDKIYTNFEEIRQEIERETDRMAGSNKGISPEPINLKIYSTTV----VNLTLVDL 147
+ + + K + EEI +E + E + + + + K+++ T +N+ L L
Sbjct: 263 EIVELESKHSAHVEEILEEHQLEIETIKADYEE-QRSALETKLFAVTSECTSLNIKLQRL 321
Query: 148 PGDQPEDIENQIRNLIIKYISNPNSIILAVTAANTDMATSEAIKLAKD 195
+ +DIEN+I++ I KY S P+ LA A DM E +L KD
Sbjct: 322 QEETEQDIENRIQDAIEKYKSLPDE--LASMKAVLDMKNDEIKQLRKD 367
>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
Length = 957
Score = 34.7 bits (76), Expect = 0.22
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 28 IAVLGTQSSGKSSVIESLVGRSFLPRGPGIVTRRPLILQLVYSPQEGKEHRSAE-EGTLN 86
I V+G +SGKSS+I L+G ++LP T R I+++ YS E + E
Sbjct: 95 ILVVGQTNSGKSSLINELLGGTYLPTAEIPCTSR--IVRICYSDNNYVEVQGPNGECVQG 152
Query: 87 LEEWGKFLHTKDKIYTNFEEIRQEIE 112
+ +GK +D+I + ++ R + E
Sbjct: 153 KQSFGKKRIPRDEIALDDDKKRSDAE 178
>SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 33.1 bits (72), Expect = 0.67
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 151 QPEDIENQIRNLIIKYISNPNSIILAVTAANTDMATSEAIKLAKDVDPDGRRTLAVVTKL 210
Q + + ++ ++ +K +++ + D S L +DP G+RT+ V+TK+
Sbjct: 128 QGQTVSPEVISMTVKGPGLHRMVLVDLPDGAIDAERSNVTDLVSSMDPQGKRTIFVLTKV 187
Query: 211 DLMD 214
DL +
Sbjct: 188 DLAE 191
Score = 31.5 bits (68), Expect = 2.1
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 105 EEIRQEIERETDRMAGSNKGISPEPINLKIYSTTVVNLTLVDLPGDQPEDIENQIRNLI 163
+++R E+E R + +SPE I++ + + + LVDLP + + + +L+
Sbjct: 112 KDLRHEVELRMKRSVKQGQTVSPEVISMTVKGPGLHRMVLVDLPDGAIDAERSNVTDLV 170
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 32.7 bits (71), Expect = 0.89
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 16/196 (8%)
Query: 185 ATSEAIKLAKDVDPDGRRTLAVVTKL-DLMDAGT---DAIDILCGRVIPVKLGIIGVVNR 240
ATS+ L + + R ++ T+L DL GT + + L + KL I VNR
Sbjct: 3 ATSQVCDLEVKYEYECREKASLETQLEDLKKRGTTNREELSKLEQTITEQKLAI-DTVNR 61
Query: 241 SQQDIIDKKTITDALKDEATYLQRKYPTIATRLTRMDILTAIRNATGPRPALFVPEVSFE 300
D+ DK+ + LKD +L+ + T+ L R+ R + + E
Sbjct: 62 ---DVKDKEHYIEQLKDGKEFLEEQLKTLRLSLEE-------RDKESERSRQELSGIQRE 111
Query: 301 LLVKRQIRRLEDPSLRCVELVHEEMQRIVQHCGTEVQQEMLRFPRLHQRIVDVVTQLLRT 360
LL + D ++ L + +QRI + T V +E + H+ + + ++QL T
Sbjct: 112 LLSLKSSTSDHDARIKKSNLERDRIQRI-EGDYTAVMEEKKKVEAQHKAMTEKISQLSST 170
Query: 361 RLPPTNSMVENLVAIE 376
+ E V ++
Sbjct: 171 SETEMKKIREENVVVK 186
>SB_56681| Best HMM Match : adh_short (HMM E-Value=0.035)
Length = 437
Score = 31.9 bits (69), Expect = 1.6
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 15/145 (10%)
Query: 186 TSEAIKLAKDVDPDGRRTLAVVTKLDLMDAGTDAIDILCGRVIPVKL---GIIGVVNRSQ 242
+SE++ L K +D RR+ A KL++ +G D C V+L ++ + N +
Sbjct: 288 SSESVLLEKRLDDLCRRSSAQKKKLNVRGSGKPRFDF-CNSACKVRLLRKEVVEIKNLVE 346
Query: 243 QDIIDKKTITD------ALKDEATYLQRKYPTIATRLTRMDILTAIRNATGPRPALFVPE 296
+ + + +I + ALKDE L+ ++ ++ + T N P +PE
Sbjct: 347 ERVEETSSIAERDELVKALKDEVRRLKGNNDSLRQQIRHLKRETCDANVGTP-----IPE 401
Query: 297 VSFELLVKRQIRRLEDPSLRCVELV 321
+ E R+I+ L++ + + + V
Sbjct: 402 LKTEQSKNRKIKILKNKAEKALAFV 426
>SB_23766| Best HMM Match : 4_1_CTD (HMM E-Value=1.1)
Length = 69
Score = 31.9 bits (69), Expect = 1.6
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 174 ILAVTAANTDMATSEAIKLAKDVDPDGRRTLAVVTKLD 211
++A +TD A +EAI+ A++ DP+ + T V+T+ D
Sbjct: 28 VIATGDPDTDAAIAEAIRQAREADPNVKVTEVVITRND 65
>SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)
Length = 906
Score = 31.9 bits (69), Expect = 1.6
Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 6/150 (4%)
Query: 17 TVGADAIQLPQIAVLGTQSSGKSSVIESLVGRSFLPRGPG----IVTRRPLILQLVYSPQ 72
T + I+ P SS +E + G FLP PG + R P+ Q ++
Sbjct: 745 TTSHEDIRAPAEGTAPKSSSAFGGSVEDIAGEDFLPVDPGCYYSVALRCPINSQRIFWAS 804
Query: 73 EGKEHRSAEEGTLNLEEWGKFLHTKDKIYTNFEEIRQ-EIERETDRMAGSNKGISPE-PI 130
+ ++ EE L ++ K + TN ++ + +T +G+ E P
Sbjct: 805 LKRTNQQNEEYNQFLSNLKSYMEAKGESLTNPFLLKSCCVRSDTKGRVRYRRGLIVEIPS 864
Query: 131 NLKIYSTTVVNLTLVDLPGDQPEDIENQIR 160
N KI +L + + P + PE + Q +
Sbjct: 865 NDKIGQGLEGDLAVGNRPREIPEHCKPQYK 894
>SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05)
Length = 202
Score = 31.1 bits (67), Expect = 2.7
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 17 TVGADAIQLPQIAVLGTQSSGKSSVIESLVGRSFLPRGPGIVTRRPLILQLVYS 70
++ D + +P + V+G Q+ GKS+ + L+ +LP T R I+++ YS
Sbjct: 55 SLSKDGLFIPSVIVIGNQNCGKSTFLNVLLKGKYLPVHENPCTSR--IVRISYS 106
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 30.3 bits (65), Expect = 4.7
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 133 KIYSTTVVNLTLVDLPGDQPEDIENQIRNLIIKYISNPNSIILAVTAANTD 183
++++TT V++T++DL D P + + N I S + + VTA++ D
Sbjct: 5388 QLFNTTTVHITVLDL-NDNPPAFDKAVFNASIAENSESGASVTRVTASDRD 5437
>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2532
Score = 30.3 bits (65), Expect = 4.7
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 88 EEWGKFLHTKDKIYTNFEEIRQEIERETD--RMAG-SNKGISPEPINLKIYSTTVVNLTL 144
EE K T +KI + ++I++ I+ ++ +A SN + + + TV N
Sbjct: 228 EEVSKLKVTTEKIAGDIQDIKRSIQGQSSSGHVANISNVTLKDGATSAVADNATVSNTVS 287
Query: 145 --VDLPGDQPEDIENQIRNLIIKYISNPNSII 174
V+ P +P+ IEN I+ L KY + N++I
Sbjct: 288 ASVEKPHTRPKVIENLIKCLREKYTTGENALI 319
>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 29.9 bits (64), Expect = 6.3
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 16 NTVGADAIQLPQIAVLGTQSSGKSSVIESLVGRSFL 51
+TV D +L ++A++G +SGKS++I LVG +
Sbjct: 31 STVAPDT-KLLKVAIIGEPNSGKSTLINQLVGEKIV 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,217,130
Number of Sequences: 59808
Number of extensions: 797387
Number of successful extensions: 2338
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2313
Number of HSP's gapped (non-prelim): 27
length of query: 612
length of database: 16,821,457
effective HSP length: 86
effective length of query: 526
effective length of database: 11,677,969
effective search space: 6142611694
effective search space used: 6142611694
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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