Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001164-TA|BGIBMGA001164-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (248 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)             31   0.68 
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)                 29   2.7  
SB_48561| Best HMM Match : AAA (HMM E-Value=0)                         29   4.8  
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  

>SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)
          Length = 425

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 184 DLKNLFNGNKELADTTLQFANENWQQLMDDLAPPAIKQI 222
           DL+  F  NKEL D  L   N++ Q+L   +A  + KQ+
Sbjct: 153 DLEKAFTENKELRDALLAVENDDTQKLQQQVANLSAKQL 191


>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 23   PPYIEACEFSNENLEQCIKEQIEKSLPEFTKGIPE 57
            PP ++ CE++ EN+E+   + ++ +      GIP+
Sbjct: 1015 PPALDPCEYNTENMEEVCFDHLKSTYQSDYTGIPQ 1049


>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
          Length = 2297

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 9/183 (4%)

Query: 40  IKEQIEKSLPEFTKGIPELDVPSTDPVHLDDINIDGNGLKLTFT-KALMHGLKGSHLKEF 98
           +K  +E  +P+ +   P++D  +   ++L D NI G G K+            G H   F
Sbjct: 512 VKANVE--VPDASIKGPDIDGSAGGSINLPDANIKGPGFKIKGDHDGSSSDSDGDHSHGF 569

Query: 99  KL-KFDGDHGNFKLAFISNMSLTAEYEADGKLLILQIKGKGDALINCVNVDVEIESKLNQ 157
            + KF      FK         + + + +G  L    K +GD     VNV  +I++    
Sbjct: 570 SMPKF--KMPKFKGPSFGGKGKSGDIDVEGPEL-KGPKVEGDIDTPDVNVKGDIDTPDFN 626

Query: 158 VK-DNNGKDHLKLGTPSYKYKIEKTTFDLKNLFNGNKELADTTLQFANENWQQLMDDLAP 216
           VK D  G D   + +P +K+K  K        F G  +  D  ++  + +   +  D+  
Sbjct: 627 VKGDIEGPD-ADIDSPGWKFKGPKMPKFKGPSFGGKGKSGDIDIEGPDFDGPNVKGDIDT 685

Query: 217 PAI 219
           P I
Sbjct: 686 PDI 688


>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
          Length = 2021

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 59  DVPSTDPVHLDDINIDGNGLKLT 81
           D+   D VH+DD+  D NGL L+
Sbjct: 572 DLEDCDQVHIDDVAADDNGLDLS 594


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 120 TAEYEADGKLLILQIKG-KGDALINCVNVDVEIESKLNQVKDNNGKDHLKLGTPSY 174
           +AEY+   KLL+ Q+K  +G A +  +N+ ++++ K    +   G   L    P Y
Sbjct: 233 SAEYKTAEKLLLWQVKSIRGGAEV-AINIKLKLKDKAKSARKELGPVSLDFEIPMY 287


>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 22  LPPYIEACEFSNENLEQCIK-EQIEKSLPEFT---KGIPELDVPSTDPVH 67
           LP Y EAC  S +  E C++   + + LP+     +G+P+L    + P +
Sbjct: 216 LPQYFEACHSSPQYFEACLQLPPVFRGLPQLPPVFRGLPQLPPSISRPAN 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,389,835
Number of Sequences: 59808
Number of extensions: 358675
Number of successful extensions: 858
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 12
length of query: 248
length of database: 16,821,457
effective HSP length: 80
effective length of query: 168
effective length of database: 12,036,817
effective search space: 2022185256
effective search space used: 2022185256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)