Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001164-TA|BGIBMGA001164-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (248 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    73   3e-15

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 72.5 bits (170), Expect = 3e-15
 Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 11/229 (4%)

Query: 22  LPPYIEACEFS--NENLEQCIKEQIEKSLPEFTKGIPELDVPSTDPVHLDDINI-DGNG- 77
           LP     C+ S   +   QCI E +  ++     G+    +   +P+ +D + I +  G 
Sbjct: 24  LPNNWRICDRSLPQKEYNQCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGS 83

Query: 78  --LKLTFTKALMHGL-KGSHLKEFKLKFDGDHGNFKLAFISNMSLTAEYEADGKLLILQI 134
             L+  +    ++GL K   +K + + +D    + + ++   +   A+Y+ +GK+L+L +
Sbjct: 84  VTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSE-SYNPQVDFVADYKIEGKVLLLPV 142

Query: 135 KGKGDALINCVNVDVEIESKLNQVK-DNNGKDHLKLGTPSYKYKIEKTTFDLKNLFNGNK 193
           +G G +  N    D++  + +   K + NG+ +L++   + K+   K     +NLF+GNK
Sbjct: 143 RGAGKS--NITMYDLKSHNDIYCEKYEKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNK 200

Query: 194 ELADTTLQFANENWQQLMDDLAPPAIKQIVKTVVKAINKFFASVTTQQI 242
           EL +   +F NEN + L  +L     +       K  N+ F  V   +I
Sbjct: 201 ELGEQMNRFINENSELLFKELQAAYEETFSLVFTKIDNEIFNRVPFDKI 249


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,109
Number of Sequences: 429
Number of extensions: 2930
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 1
length of query: 248
length of database: 140,377
effective HSP length: 56
effective length of query: 192
effective length of database: 116,353
effective search space: 22339776
effective search space used: 22339776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)