GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001164-TA|BGIBMGA001164-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    29   0.63 
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    28   1.5  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    27   1.9  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   2.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   4.5  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   5.9  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    25   7.8  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   7.8  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 138 GDALINCVNVDVEIESKLNQVKDNNGKDHLKLGTPSYKYKIEKTTFDLKNLFNGNKELAD 197
           GD     +N   EI S  + +    GK  LKL   S+   +     + KNL +G  +  +
Sbjct: 698 GDVEFYFINGSQEIPSLFHSIWIMTGKG-LKLWL-SFSEILSSVLINTKNLIDGLPKFLN 755

Query: 198 TTLQFANENWQQL-MDDLAPPA 218
           T+ + + EN+ +L ++DL  P+
Sbjct: 756 TSKRVSLENFHRLSVEDLRSPS 777


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 991

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)

Query: 46 KSLPEFTKGIPELDVPSTDPVHLDDINIDGNGL 78
          + LP+ T+  P+L +P+ + V  D++ +D NG+
Sbjct: 27 EKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGI 59


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 147 VDVEIESKLNQVKDNNGKDHLK--LGTPSYKYKIEKTTFD 184
           VDV++ SK+NQ+ D      L   +GTPS  +  E    D
Sbjct: 34  VDVDLVSKVNQLYDQQIAPMLSDAIGTPSVNHSFELAPLD 73


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 173 SYKYKIEKTTFDLKNLFNGNKELADTTLQFANENWQQLMDDLAP 216
           +Y Y++   + D    FN N+++AD  +   N     +  +L P
Sbjct: 78  AYPYQVNSNSMDASTAFNLNQDVADKPMLARNSIDSSINTELGP 121


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 59  DVPSTDPVHLDDINIDGNGLKLTFTKALM 87
           D+P++D V ++ IN   N L +   KALM
Sbjct: 468 DLPASDDVQIEFINFFLNNLSILTEKALM 496


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 29  CEFSNENLE--QCIKEQIEKSLPEFTKGIPELDVPSTDPVHLDDINIDG 75
           C   N++LE  Q   E++ K+ P+        D+ S D   +DD  ++G
Sbjct: 564 CHIYNDHLEALQTQLERVPKAFPKLFFKRDAKDIGSIDSFSVDDFAVEG 612


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 133 QIKGKGDALINCVNVDVEIESKLNQVKDNNGKDHLKLGTPS 173
           Q+  +G  ++N   V+  +ES L  ++     +H++  TP+
Sbjct: 456 QLVAEGKIIVNVNGVEHTVESDLVTIEKRKHTEHIRTYTPN 496


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 138  GDALINCVNVDVEIESKLNQVKDNNGKDHLKLGTPSYKYKIEKTTFDLKNLFNGNKELA 196
            G+   N V + V++ SKL    D   + HLK    SYK  +E     L  +   N+ L+
Sbjct: 1059 GEKCANIVQLQVDLLSKL---ADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKETNERLS 1114


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,994
Number of Sequences: 5004
Number of extensions: 54199
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 9
length of query: 248
length of database: 2,362,478
effective HSP length: 71
effective length of query: 177
effective length of database: 2,007,194
effective search space: 355273338
effective search space used: 355273338
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)