GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001164-TA|BGIBMGA001164-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (248 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)...    29   2.2  
At1g49870.1 68414.m05591 expressed protein ; expression supporte...    29   2.2  
At4g33630.2 68417.m04778 expressed protein                             29   3.9  
At4g33630.1 68417.m04777 expressed protein                             29   3.9  
At1g35150.1 68414.m04359 hypothetical protein                          29   3.9  
At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    28   5.1  
At1g07220.1 68414.m00768 expressed protein                             28   5.1  
At3g52310.1 68416.m05749 ABC transporter family protein contains...    28   6.8  
At1g21170.1 68414.m02647 expressed protein                             27   9.0  

>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
           identical to GB:CAA09207, contains a DEAD/DEAH box
           family ATP-dependent helicas signature; identical to
           cDNA DEAD box RNA helicase, RH17 GI:3776008
          Length = 609

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 14/109 (12%)

Query: 28  ACEFSNENLEQCIKEQIEKSLPEFTKGIPELDVPSTDPVHLD--DINID---GNGLKLTF 82
           +C FS+  L+  + +Q+++ +  F    P L      PV L   D+ ++   G G  + +
Sbjct: 28  SCSFSSLGLDTKLSDQLKERMG-FEA--PTLVQAQAIPVILSGRDVLVNAPTGTGKTIAY 84

Query: 83  TKALMHGLKGSHLKEFKLKFDGDHGNFKLAFISNMSLTAE-YEADGKLL 130
              L+H     HL+    K D  HG F L  +    L  + YE   KLL
Sbjct: 85  LAPLIH-----HLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLL 128


>At1g49870.1 68414.m05591 expressed protein ; expression supported
           by MPSS
          Length = 828

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 86  LMHGLKGSHLKEFKLKFDGDHGNFKLAFISNMSLTAEYEADGKLLILQIKGKGDALINCV 145
           +MH    S  K+++++  G HG          S    ++ D K +   +K     L NC 
Sbjct: 174 IMHDKPNSSRKQYRIETSGTHGRGSPTHTVTASFETAFDVD-KEVAAAVKTAFARLANCP 232

Query: 146 NVD-VEIESKLNQVKDN 161
           +    EI+  L ++ +N
Sbjct: 233 SFSKAEIKDLLKKISEN 249


>At4g33630.2 68417.m04778 expressed protein
          Length = 684

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 58  LDVPSTDPVHLDDINIDGNGLKLT--FTKALMHGLKGSHLKEFKLKFDGD-HGNFKLAFI 114
           L V S++    D+ + D + L+ +  F   L   + G  +K  K+   G    +F    I
Sbjct: 297 LAVESSEDEESDNSDDDSDLLEESSGFQSFLRDMIPGVKVKVMKVTAPGRVDKDFISKVI 356

Query: 115 SNMSLTAEYEADGKLLILQIKGKGDALINCVNVDVEIESKLNQVKDNNG 163
             ++   + E D  +  + ++    A I+  N D+E+ES  +++ DNNG
Sbjct: 357 EQIADEEDEENDLDIEDIDVEDDTKAEIDEKNADIELESVTDEIIDNNG 405


>At4g33630.1 68417.m04777 expressed protein
          Length = 684

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 58  LDVPSTDPVHLDDINIDGNGLKLT--FTKALMHGLKGSHLKEFKLKFDGD-HGNFKLAFI 114
           L V S++    D+ + D + L+ +  F   L   + G  +K  K+   G    +F    I
Sbjct: 297 LAVESSEDEESDNSDDDSDLLEESSGFQSFLRDMIPGVKVKVMKVTAPGRVDKDFISKVI 356

Query: 115 SNMSLTAEYEADGKLLILQIKGKGDALINCVNVDVEIESKLNQVKDNNG 163
             ++   + E D  +  + ++    A I+  N D+E+ES  +++ DNNG
Sbjct: 357 EQIADEEDEENDLDIEDIDVEDDTKAEIDEKNADIELESVTDEIIDNNG 405


>At1g35150.1 68414.m04359 hypothetical protein
          Length = 459

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 26 IEACEFSNENLEQCIKEQIEKSLPEFTKGIPELDVPSTDPVHLDDINIDGNGLKLTFTKA 85
          ++  EF N++ ++ + E+ +    E      EL    +DPV+ DD+N+    L +    A
Sbjct: 34 VDENEFDNKDQDEVVHEEKKSGQKE------ELPSNISDPVNWDDMNMRFRDLLVEKGLA 87

Query: 86 LMHGLKGSHL 95
            H  KG +L
Sbjct: 88 TRHDKKGGYL 97


>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 96  KEFKLKFDGDHGNFKLAFISNMSLTAEYEADGKLLILQIKGKGDALINCVNVDVEIESKL 155
           KE  L F G+  N     + ++    E EA      L+ KG+ +  +  +   V I+  +
Sbjct: 499 KELGLAFKGNQKNV----VESLEAMNEEEAMEMKATLESKGEVEFYVCTLKKSVNIKKNM 554

Query: 156 NQVKDNNGKDHLKLGTPS 173
             +     K+H ++ TPS
Sbjct: 555 VSISKEKKKEHQRVFTPS 572


>At1g07220.1 68414.m00768 expressed protein
          Length = 507

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 39  CIKEQIEKSLPEFTKGIPELDVPSTDPV 66
           CI EQ E+ L E ++ +P LD P   PV
Sbjct: 447 CIAEQKERELLERSRVVPSLDQPCKFPV 474


>At3g52310.1 68416.m05749 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter
          Length = 737

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 37  EQCIKEQIEKSLPEFTKGIPELDVPSTDPVHLDDINI----DGNGLKLTFTKALMHGLKG 92
           E+C  + I + +   T  + +     T P++L  I+I       G+  +  K++++G+ G
Sbjct: 114 ERCSNDDILEDIEAATSSVVKFQAEPTFPIYLKFIDITYKVTTKGMTSSSEKSILNGISG 173

Query: 93  SHLKEFKLKFDGDHGNFKLAFIS 115
           S      L   G  G+ K   ++
Sbjct: 174 SAYPGELLALMGPSGSGKTTLLN 196


>At1g21170.1 68414.m02647 expressed protein
          Length = 1090

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 23/144 (15%)

Query: 41  KEQIEKSLPEFTKGIPELDVPSTDPVHLDDINIDGNGLKLTFTKALMHGLKGSHLKEFKL 100
           K+ +  SL  F +G+  +D     P+ L  I+     L    +++L    K  +    KL
Sbjct: 170 KKVVLTSLQSFPRGMECID-----PLKLGIIDNKTLRLITESSESLSKAEKVDNALREKL 224

Query: 101 KFDGDHGNFKLAFISNM---SLTAEYEADGKLLILQIKGKG-----------DALINCVN 146
            +  DH + KL FIS +   +  A+ E+    L   +KG+            D  ++C  
Sbjct: 225 VYTSDHFDPKL-FISRIHQETSAADLESGALALKSDLKGRNLQRKQLVKDNFDCFVSCKT 283

Query: 147 VDVEIESKLNQVKDN---NGKDHL 167
              +IESKL +++D+   +G  HL
Sbjct: 284 TIDDIESKLKRIEDDPDGSGTTHL 307


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,144,536
Number of Sequences: 28952
Number of extensions: 272684
Number of successful extensions: 665
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 9
length of query: 248
length of database: 12,070,560
effective HSP length: 79
effective length of query: 169
effective length of database: 9,783,352
effective search space: 1653386488
effective search space used: 1653386488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)