Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001163-TA|BGIBMGA001163-PA|IPR002290|Serine/threonine
protein kinase, IPR000961|Protein kinase, C-terminal,
IPR000719|Protein kinase, IPR008271|Serine/threonine protein kinase,
active site, IPR011009|Protein kinase-like
         (366 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...   251   8e-69
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...   111   7e-27
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    97   2e-22
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    73   5e-15
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    73   5e-15
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                64   2e-12
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    59   7e-11
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   5.5  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   9.6  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   9.6  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score =  251 bits (614), Expect = 8e-69
 Identities = 127/326 (38%), Positives = 193/326 (59%), Gaps = 13/326 (3%)

Query: 43  VESWDDKS---ESNAKLNDFERQKV-----LGTGAFGIVFLVKHIV-TGKYYAMKMLEKE 93
           VE W++++   E N +  D   Q +     LG G FG V LV+    + + +A+K ++K 
Sbjct: 343 VEGWENRATIPELNEEFRDLRLQDLRPLATLGVGGFGRVELVQIAGDSSRSFALKQMKKA 402

Query: 94  KIVRLKQIEHSYYEKKILCGLNFPFVVYMKYYFKDNVYLYYVLPFIAGGEMFSHLRKMGK 153
           +IV  +Q +H   EK+I+   +  FVV +   FKD  YLY ++    GGE+++ LR  G 
Sbjct: 403 QIVETRQQQHIMSEKRIMGEADCDFVVKLFKTFKDRKYLYMLMEACLGGELWTVLRDKGH 462

Query: 154 FEETSAKFYGAQVILALEYLHACELVYRDLKPENILIDRTGYIKITDFGFCK-LIRGR-T 211
           F++ + +FY A V+ A +YLH+  ++YRDLKPEN+L+D  GY+K+ DFGF K L  GR T
Sbjct: 463 FDDGTTRFYTACVVEAFDYLHSRNIIYRDLKPENLLLDSQGYVKLVDFGFAKRLDHGRKT 522

Query: 212 WTLCGTPEYLAPEIILSKGYGMSVDWWSLGVLLFEMSAGHPPFFASDPMRIYEKIVAG-- 269
           WT CGTPEY+APE+IL+KG+ +S D+WSLGVL+FE+  G PPF   DPM+ Y  I+ G  
Sbjct: 523 WTFCGTPEYVAPEVILNKGHDISADYWSLGVLMFELLTGTPPFTGGDPMKTYNIILKGID 582

Query: 270 KYRCPSHFSVELKDIIGHVLQVDTTRRYGTLKDGVLDFKNHKWFREIDWDSILNSRIHPP 329
               P   +     +I  + + +   R G  K G+ + + HKWF   +W+ +    + PP
Sbjct: 583 AIEFPRSITRNATALIKKLCRDNPAERLGYQKGGISEIQKHKWFDGFNWEGLRARTLEPP 642

Query: 330 FFPKIRSPGDTTNFDVFDEEKIKDSP 355
             P++++  DTTNFD +  +     P
Sbjct: 643 IMPRVQNATDTTNFDEYPPDSDPPPP 668


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score =  111 bits (268), Expect = 7e-27
 Identities = 56/142 (39%), Positives = 91/142 (64%), Gaps = 4/142 (2%)

Query: 81  TGKYYAMKMLEKEKIVRLKQIEHSYYEKKILC-GLNFPFVVYMKYYFKDNVYLYYVLPFI 139
           T + YA+K+L+K+ I++   +E +  EK++L      PF+V +   F+    LY+V+ ++
Sbjct: 8   TDELYAIKILKKDIIIQDDDVECTMVEKRVLALSTKPPFLVQLHSCFQTMDRLYFVMEYV 67

Query: 140 AGGEMFSHLRKMGKFEETSAKFYGAQVILALEYLHACELVYRDLKPENILIDRTGYIKIT 199
            GG++   +++ GKF+E  A FY +++ + L +LH   +VYRDLK +N+L+D+ G+IKI 
Sbjct: 68  NGGDLMYQIQQCGKFKEPVAVFYASEIAIGLFFLHGRGIVYRDLKLDNVLLDQDGHIKIA 127

Query: 200 DFGFCKL-IRG--RTWTLCGTP 218
           DFG CK  I G   T T CGTP
Sbjct: 128 DFGMCKEGISGDKTTKTFCGTP 149


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 97.1 bits (231), Expect = 2e-22
 Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 10/153 (6%)

Query: 154 FEETSAKFYGAQVILALEYLHACELVYRDLKPENILID---RTGYIKITDFGFCKLIRG- 209
           + E  A     Q++ ++ + H   +V+RDLKPEN+L+    +   +K+ DFG    ++G 
Sbjct: 6   YSEADASHCIQQILESVHHCHHNGVVHRDLKPENLLLASKAKGAAVKLADFGLAIEVQGE 65

Query: 210 -RTWT-LCGTPEYLAPEIILSKGYGMSVDWWSLGVLLFEMSAGHPPFFASDPMRIYEKIV 267
            + W    GTP YL+PE++  + YG  VD W+ GV+L+ +  G+PPF+  D  R+Y +I 
Sbjct: 66  AQAWFGFAGTPGYLSPEVLKKEPYGKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIK 125

Query: 268 AGKYRCPS----HFSVELKDIIGHVLQVDTTRR 296
            G Y  PS      + E K++I  +L V+ ++R
Sbjct: 126 TGSYDYPSPEWDTVTPEAKNLINQMLTVNPSKR 158


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 72.5 bits (170), Expect = 5e-15
 Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 166 VILALEYLHACELVYRDLKPENILIDRTGYIKITDFGFCKLIRGRTWTLCGTPEYLAPEI 225
           V+  + YLH+  LV+RD+K +N+L+D     K+TDFGFC        ++ GTP ++APE 
Sbjct: 706 VLEGIRYLHSQGLVHRDVKLKNVLLDIENRAKLTDFGFCITEVMMLGSIVGTPVHMAPE- 764

Query: 226 ILSKGYGMSVDWWSLGVLLFEMSAGH 251
           +LS  Y  SVD ++ G+L + + AGH
Sbjct: 765 LLSGHYDSSVDVYAFGILFWYLCAGH 790


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 72.5 bits (170), Expect = 5e-15
 Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 166 VILALEYLHACELVYRDLKPENILIDRTGYIKITDFGFCKLIRGRTWTLCGTPEYLAPEI 225
           V+  + YLH+  LV+RD+K +N+L+D     K+TDFGFC        ++ GTP ++APE 
Sbjct: 744 VLEGIRYLHSQGLVHRDVKLKNVLLDIENRAKLTDFGFCITEVMMLGSIVGTPVHMAPE- 802

Query: 226 ILSKGYGMSVDWWSLGVLLFEMSAGH 251
           +LS  Y  SVD ++ G+L + + AGH
Sbjct: 803 LLSGHYDSSVDVYAFGILFWYLCAGH 828


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 63.7 bits (148), Expect = 2e-12
 Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 14/193 (7%)

Query: 65  LGTGAFGIVFLVKHIVTGKYYAMKMLEKEKIVRLKQIE-HSYYEKKILCGLNFPFVVYMK 123
           LG+G FGIV+  K +  G+  A K+++ EK   +   E H+ + K      N   V+ ++
Sbjct: 73  LGSGGFGIVY--KALYKGEQVAAKIIQTEKYSNMLNSEKHASFLKHS----NIVKVLMIE 126

Query: 124 YYFKDNVYLYYVLPFIAGGEMFSHLRKMGKFEETSAKFYGAQVILALEYLHACELVYRDL 183
                   L  +   + G  + + L +    +        + +  AL++ H   +V+ D+
Sbjct: 127 ----QGASLSLITMELCGTTLQNRLDEAILIKNERICILKS-ITCALQFCHNAGIVHADV 181

Query: 184 KPENILIDRTGYIKITDFGFCKLI--RGRTWTLCGTPEYLAPEIILSKGYGMSVDWWSLG 241
           KP+NIL+ + G  K+TDFG   LI          GTP Y APE+I       + D +SLG
Sbjct: 182 KPKNILMSKNGQPKLTDFGSSVLIGAPNEIDKFYGTPGYTAPEVIKQNRPTPAADIYSLG 241

Query: 242 VLLFEMSAGHPPF 254
           ++ ++M     PF
Sbjct: 242 IVAWQMLFRKLPF 254


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 58.8 bits (136), Expect = 7e-11
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 9/177 (5%)

Query: 107 EKKILCGLNFPFVVYMKYYFKDNVYLYYVLPFIAGGEMFSHLRKM-GKFEETSAKFYGAQ 165
           E  I+     P V++++     +  +  +  F+  G + + LR   GKF+          
Sbjct: 684 EASIMGQFEHPNVIFLQGVVTKSNPVMIITEFMENGSLDTFLRANDGKFQVLQLVGMLRG 743

Query: 166 VILALEYLHACELVYRDLKPENILIDRTGYIKITDFGFCKLIRGRT---WTLCG---TPE 219
           +   ++YL     V+RDL   N+L++     KI DFG  + I   T   +T  G      
Sbjct: 744 IASGMQYLAEMNYVHRDLAARNVLVNAALVCKIADFGLSREIESATEGAYTTRGGKIPVR 803

Query: 220 YLAPEIILSKGYGMSVDWWSLGVLLFE-MSAGHPPFFASDPMRIYEKIVAGKYRCPS 275
           + APE I  + +  + D WS+G++ +E MS G  P++      + + I  G YR P+
Sbjct: 804 WTAPEAIAFRKFTSASDVWSMGIVCWEVMSYGERPYWNWSNQDVIKSIEKG-YRLPA 859


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 117 PFVVYMKYYFKDNVYLYYVLPFIAGGEMFSHLRKMGKFEETS 158
           P +V     F D   L+ ++ FI  GE+  H R +  F +T+
Sbjct: 69  PVIVLQDVAFSD---LHALVEFIYHGEVNVHQRSLSSFLKTA 107


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 114 LNFPFVVYMKYYFKDNVYLYYVLPFIA 140
           L+  +  Y K + KDN+   Y + F +
Sbjct: 101 LHILWTSYKKVFMKDNILRQYFITFFS 127


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 114 LNFPFVVYMKYYFKDNVYLYYVLPFIA 140
           L+  +  Y K + KDN+   Y + F +
Sbjct: 84  LHILWTSYKKVFMKDNILRQYFITFFS 110


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.142    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,394
Number of Sequences: 429
Number of extensions: 5273
Number of successful extensions: 27
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 11
length of query: 366
length of database: 140,377
effective HSP length: 59
effective length of query: 307
effective length of database: 115,066
effective search space: 35325262
effective search space used: 35325262
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)