GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001162-TA|BGIBMGA001162-PA|IPR002401|E-class P450, group
I, IPR001128|Cytochrome P450
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    81   3e-16
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    71   4e-13
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    35   0.026
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    30   0.73 
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    28   3.9  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    28   3.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   3.9  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    27   6.8  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   9.0  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 2/163 (1%)

Query: 343 SDEEIKEQVDTIMFEGHDTTAAGSSFFLSMMGIHQDIQDKVIEELDQIF-GDSDRPVTFQ 401
           SDEEI     + +F   D T++  ++   ++  H D+  KV EE  +I  GD D P++  
Sbjct: 305 SDEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLD 364

Query: 402 DTLEMKYLERCLMETLRLYPPVPIIARQVNQEITLPSNGKKIPAGTTLVIATYKLHRRPD 461
              +M Y    + E LRL PPV ++  +V +   +  +   +P    ++   Y       
Sbjct: 365 LMEKMTYTRAVVKECLRLRPPVLMVPYRVKKAFPITPD-YTVPKDAMVIPTLYGALHDSK 423

Query: 462 VYPNPNKFDPDNFLPERSANRHYYAFVPFSAGPRSCVGRKYAM 504
           VYP P  F+PD + P   A +    ++ F  GP  C+G++YA+
Sbjct: 424 VYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAV 466


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 70.9 bits (166), Expect = 4e-13
 Identities = 47/197 (23%), Positives = 93/197 (47%), Gaps = 16/197 (8%)

Query: 337 QSGVAISDEEIKEQVDTIMFEGHDTTAAGSSFFLSMMGIHQDIQDKVIEELDQIFGDSDR 396
           + G  + + EI   +  ++  G  T+AA   + L+++G   +I + + EE  ++ G++  
Sbjct: 268 RDGRPLKEHEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGEN-L 326

Query: 397 PVTFQDTLEMKYLERCLMETLRLYPPVPIIARQVNQEITLPSNGKKIPAGTTLVIATYKL 456
            + F    +M  L   + ETLRL+PP+    R+V +++ +P +   IPA   L+ A    
Sbjct: 327 ELKFDQYKDMPLLNYVIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLT 386

Query: 457 HRRPDVYPNPNKFDP----DNFLPERSANRHYYA-----------FVPFSAGPRSCVGRK 501
               + + +   FDP    D    + +A +  Y            ++PF AG   C+G +
Sbjct: 387 ATEEEYFTHATDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQ 446

Query: 502 YAMLKLKVILSTILRNF 518
           +A + L  I+S  + ++
Sbjct: 447 FAYMHLSTIISKFVHDY 463


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 35.1 bits (77), Expect = 0.026
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 188 YMSECTVEILLETAMGVSKSTQDQ---SGFEYAMAVMKMCDILHLRHTKIWLRPDLLFKF 244
           Y+ +   EI+  T  G+  S  +Q   S  ++A  V  +CD+L L+   I  R  +L+  
Sbjct: 267 YLVDHAWEIIQATIDGICASIWNQILQSQGDFAFVVRTLCDLLKLKPNPISGRDPVLYAT 326

Query: 245 TDYAKNQTKLLDIIHGLTKKVIKRKKEEFA 274
               K    L+       +K+IK ++E+F+
Sbjct: 327 VSQQKYLYNLMKERFSYFEKIIKSRQEDFS 356


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 331 LLLESSQSGVAISDEEIKEQVDTIMFEGHDTTAAGSSFFLSM 372
           LLL    +G+A  DE + E V TI+F  +D   AGS+  +SM
Sbjct: 460 LLLGIGLTGMASRDETLYESVKTILF--NDNAVAGSAAGISM 499


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 334 ESSQSGVAIS-DEEIKEQVDTIMFEGHDTTAAGSSFFLSMMGIHQDIQD-KVIEELDQIF 391
           E  + G+ I   +E+K   D   F    T   G++ +++      ++ D   I E +++ 
Sbjct: 424 EEDEHGMTIGFSKELKAPPDPQYF----TEKTGATTYVNGNDESLNVSDFPQIVEQEELS 479

Query: 392 GDSDRPVTFQDTLEMKYLERCLMETLRLYP 421
             + R V F DTLE+K++ R     + + P
Sbjct: 480 SKNPRKVHFSDTLEIKHVSRSGKANIEVIP 509


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 203 GVSKSTQDQSGFEYAMAVMKMCDILH 228
           G  ++T D   F + +AV+K CDI+H
Sbjct: 149 GSGRNTTDIVLFPFVLAVIKCCDIVH 174


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 158  LKSFIDLFNAN--SRAVVDKLKKEASNFDCHDYMSECTVEILLETAMG 203
            L    D  N+N  S+ + D+L   A++ + HDY +   ++  + T +G
Sbjct: 1156 LNMLFDRLNSNVLSKPLTDELLALATSLNAHDYQTASNIQTNIVTTLG 1203


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 271 EEFASGKKPSNLNETATTSEPSTGKLTSVE 300
           ++  +GK PSN N T   S+P++    SV+
Sbjct: 112 QKHINGKPPSNSNSTEDASKPTSSDTASVK 141


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 129 WLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVV 173
           W+GNG    T   + +  + I  T HL    S +D  + N+  V+
Sbjct: 67  WIGNGHAAETTLYFPASHQQIQLTLHLENQNSIVDSIHINADTVL 111


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,470
Number of Sequences: 5004
Number of extensions: 103577
Number of successful extensions: 264
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 9
length of query: 556
length of database: 2,362,478
effective HSP length: 76
effective length of query: 480
effective length of database: 1,982,174
effective search space: 951443520
effective search space used: 951443520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)