Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001161-TA|BGIBMGA001161-PA|undefined
         (119 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   3.2  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    23   9.7  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 20  EVPAAGEVPAAGEVPAAGEVP 40
           EVP+A + PAA  VP A  VP
Sbjct: 540 EVPSAPQRPAAPVVPEAPSVP 560



 Score = 23.8 bits (49), Expect = 7.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 22  PAAGEVPAAGEVPAAGEVP 40
           P A EVP+A + PAA  VP
Sbjct: 536 PVAPEVPSAPQRPAAPVVP 554


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
          Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 7  KLESSKVASVDRGEVPAAGEVPAAGEVPAAGE 38
          KL+ + ++   +   P A + P+AG  PA G+
Sbjct: 18 KLQKTNISRPRKYIPPFARDKPSAGAAPAVGD 49


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.308    0.124    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,874
Number of Sequences: 5004
Number of extensions: 4268
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 14
length of query: 119
length of database: 2,362,478
effective HSP length: 65
effective length of query: 54
effective length of database: 2,037,218
effective search space: 110009772
effective search space used: 110009772
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 48 (23.4 bits)