Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001161-TA|BGIBMGA001161-PA|undefined
         (119 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    27   2.6  
AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    26   6.1  
U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.        26   8.1  
U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.        26   8.1  
U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family pro...    26   8.1  
U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family pro...    26   8.1  
AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.       26   8.1  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
          protein Y62E10A.1 protein.
          Length = 110

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 10 SSKVASVDRGEVPAAGEVPAA-GEVPAAGEVPS 41
          S+ + SV  G  PAA   PAA G  PAA   P+
Sbjct: 59 SAGLVSVSGGAAPAAAAAPAAGGAAPAADSKPA 91


>AL117195-14|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18 protein.
          Length = 1456

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 13   VASVDRGEVPAAGEVPAAGEVPAAGEVPS 41
            V    R  +  A +VP A E PAA   PS
Sbjct: 1188 VIGQQRNPIGGARQVPVAAEAPAAAAAPS 1216



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 20   EVPAAGEVPAAGEVPAAGEVP 40
            +VP A E PAA   P+   VP
Sbjct: 1201 QVPVAAEAPAAAAAPSRARVP 1221


>U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 1   MVSNGCKLESSKVASVDRG 19
           +V N C ++S +V S+DRG
Sbjct: 132 LVGNKCDMDSERVVSMDRG 150


>U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 1   MVSNGCKLESSKVASVDRG 19
           +V N C ++S +V S+DRG
Sbjct: 132 LVGNKCDMDSERVVSMDRG 150


>U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family
           protein 3, isoform b protein.
          Length = 219

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 1   MVSNGCKLESSKVASVDRG 19
           +V N C ++S +V S+DRG
Sbjct: 132 LVGNKCDMDSERVVSMDRG 150


>U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family
           protein 3, isoform a protein.
          Length = 233

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 1   MVSNGCKLESSKVASVDRG 19
           +V N C ++S +V S+DRG
Sbjct: 146 LVGNKCDMDSERVVSMDRG 164


>AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.
          Length = 219

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 1   MVSNGCKLESSKVASVDRG 19
           +V N C ++S +V S+DRG
Sbjct: 132 LVGNKCDMDSERVVSMDRG 150


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.308    0.124    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,329
Number of Sequences: 27539
Number of extensions: 26954
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 8
length of query: 119
length of database: 12,573,161
effective HSP length: 73
effective length of query: 46
effective length of database: 10,562,814
effective search space: 485889444
effective search space used: 485889444
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 54 (25.8 bits)