Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001161-TA|BGIBMGA001161-PA|undefined
         (119 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g...    33   0.039
At5g07510.1 68418.m00860 glycine-rich protein (GRP14) oleosin; g...    29   0.63 
At5g09480.1 68418.m01097 hydroxyproline-rich glycoprotein family...    27   2.6  
At5g20230.1 68418.m02408 plastocyanin-like domain-containing pro...    26   5.9  

>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
           glycine-rich protein 18 (GRP18) PMID:11431566;
          Length = 228

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G  PAAG  PAAG  PAAG  P+
Sbjct: 191 GAAPAAGAAPAAGAAPAAGAAPA 213



 Score = 33.5 bits (73), Expect = 0.039
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G  PAAG  PAAG  PAAG  P+
Sbjct: 197 GAAPAAGAAPAAGAAPAAGAAPA 219



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 13/20 (65%), Positives = 14/20 (70%)

Query: 22  PAAGEVPAAGEVPAAGEVPS 41
           PAAG  PAAG  PAAG  P+
Sbjct: 188 PAAGAAPAAGAAPAAGAAPA 207



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 13/19 (68%), Positives = 13/19 (68%)

Query: 19  GEVPAAGEVPAAGEVPAAG 37
           G  PAAG  PAAG  PAAG
Sbjct: 203 GAAPAAGAAPAAGAAPAAG 221



 Score = 29.9 bits (64), Expect = 0.48
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G  PAA   PAAG  PAAG  P+
Sbjct: 179 GGAPAAEAAPAAGAAPAAGAAPA 201



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G+  AAG  PAA   PAAG  P+
Sbjct: 173 GDASAAGGAPAAEAAPAAGAAPA 195


>At5g07510.1 68418.m00860 glycine-rich protein (GRP14) oleosin;
           glycine-rich protein 14 (GRP14) PMID:11431566;
           PIR:JQ1063
          Length = 193

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 7   KLESSKVASVDRGEVPAAGEVPAAGEVPAAGEVPS 41
           K+     A    G+ P A   PAAG  PAAG  P+
Sbjct: 154 KMFGPGAAGAASGDAPPAETAPAAGAAPAAGAEPA 188


>At5g09480.1 68418.m01097 hydroxyproline-rich glycoprotein family
          protein contains proline-rich extensin domains,
          INTERPRO:IPR002965; Common family members At5g09530,
          At5g09520, At1g44222 [Arabidopsis thaliana]
          Length = 144

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 9  ESSKVASVDRGEVPAAGEVPAAGEVPAAGEVP 40
          E  ++ S +  E+P   E+P   EVP   EVP
Sbjct: 59 EEPELPSPEEPEIPEEPEIPEEPEVPGEPEVP 90


>At5g20230.1 68418.m02408 plastocyanin-like domain-containing
           protein
          Length = 196

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 5   GCKLESSKVAS-VDRGEVPAAGEVPAAGEVPAAG 37
           G KL  + VA+    G  P AG  PA G  P+ G
Sbjct: 116 GQKLSITVVAAGATGGATPGAGATPAPGSTPSTG 149


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.308    0.124    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,373,332
Number of Sequences: 28952
Number of extensions: 24732
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 13
length of query: 119
length of database: 12,070,560
effective HSP length: 72
effective length of query: 47
effective length of database: 9,986,016
effective search space: 469342752
effective search space used: 469342752
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 54 (25.8 bits)