GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001161-TA|BGIBMGA001161-PA|undefined
         (119 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089...    27   3.0  
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879...    26   9.2  

>02_05_0886 +
           32507324-32507938,32508103-32508252,32508498-32508935,
           32509038-32509151,32509256-32509852
          Length = 637

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 8   LESSKVASVDRGEVPAAGEVPAAGEVPAAGEVPS 41
           LESSKV     G  PAAGE+ AAG + +    P+
Sbjct: 355 LESSKVQG---GAAPAAGELAAAGGITSQSVNPA 385


>09_06_0293 +
          22086359-22086496,22086604-22087213,22087407-22087938,
          22088617-22089151
          Length = 604

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 14 ASVDRGEVPAAGEVPAAGEVPAAGE 38
          A   R   P     P +G +PAAGE
Sbjct: 12 ADTSRSSDPTLSAAPCSGSIPAAGE 36


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.308    0.124    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,222
Number of Sequences: 37544
Number of extensions: 42645
Number of successful extensions: 158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 4
length of query: 119
length of database: 14,793,348
effective HSP length: 73
effective length of query: 46
effective length of database: 12,052,636
effective search space: 554421256
effective search space used: 554421256
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 54 (25.8 bits)