GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001161-TA|BGIBMGA001161-PA|undefined
         (119 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   0.77 
SB_14325| Best HMM Match : Ank (HMM E-Value=3.9e-08)                   27   3.1  
SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)               27   5.4  
SB_11849| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)               27   5.4  
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.4  
SB_55652| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)        26   7.2  
SB_30368| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  

>SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 618

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 5   GCKLESSK-VASVDRGEVPAAGEVPAAGEVPAAGEV 39
           GC +++SK +   ++GE      VPA G VP  G+V
Sbjct: 502 GCGVDNSKKIDDSEKGEAKEENGVPADGAVPQQGQV 537


>SB_14325| Best HMM Match : Ank (HMM E-Value=3.9e-08)
          Length = 342

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 13  VASVDRGEVPAAGEVPAAGEVPAAGEVP 40
           VA V+RG VP    + +AG  P AG+ P
Sbjct: 274 VAHVNRGHVPQRPSLTSAGIKPVAGKRP 301


>SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
          Length = 1108

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 17  DRGEVPAAGEVPAAGEVPAAGEVPS 41
           D G+ P  G V   G VP  G+VP+
Sbjct: 961 DEGKGPDTGNVQVEGNVPDEGKVPN 985


>SB_11849| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
          Length = 359

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 17  DRGEVPAAGEVPAAGEVPAAGEVPS 41
           D G+ P  G V   G VP  G+VP+
Sbjct: 212 DEGKGPDTGNVQVEGNVPDEGKVPN 236


>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 15  SVDRGEVPAAGEVPAAGEVPAAGE 38
           +V+ GE   AGE   AGE   AGE
Sbjct: 195 AVEAGEASEAGEASEAGEASEAGE 218



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 17  DRGEVPAAGEVPAAGEVPAAGEV 39
           + GE   AGE   AGE   AGEV
Sbjct: 441 EAGEAGEAGEASEAGEASEAGEV 463


>SB_55652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 1   MVSNGCKLESSKVASVDRGEVPAAGEVPAAGEVPAAGE 38
           + + G + E  ++ S D G  P  G+V A G+    GE
Sbjct: 307 VATKGEQFEVREIISDDEGNKPVKGDVKAVGDPVELGE 344


>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
          Length = 979

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 15  SVDRGEVPAAGEVPAAGEVPAAGE 38
           +V+ GE   AGE   AGE   AGE
Sbjct: 749 AVEAGEASEAGEASEAGEAGKAGE 772


>SB_30368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 9  ESSKVASV-DRGEVPAAGEVPAAGEVPAAGE 38
          E+S+ +   + GE   AGE   AGEV  AGE
Sbjct: 42 EASEASEASEAGEASEAGEASEAGEVGEAGE 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.308    0.124    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,573
Number of Sequences: 59808
Number of extensions: 36870
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 98
length of query: 119
length of database: 16,821,457
effective HSP length: 73
effective length of query: 46
effective length of database: 12,455,473
effective search space: 572951758
effective search space used: 572951758
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 54 (25.8 bits)