GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001161-TA|BGIBMGA001161-PA|undefined
         (119 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88153-1|AAC17708.2| 1284|Homo sapiens PELP1 protein.                  34   0.099
BC069058-1|AAH69058.1| 1130|Homo sapiens proline, glutamic acid ...    34   0.099
BC010457-1|AAH10457.2| 1048|Homo sapiens PELP1 protein protein.        34   0.099
BC002875-1|AAH02875.2|  743|Homo sapiens PELP1 protein protein.        34   0.099
AY882602-1|AAW80659.1| 1061|Homo sapiens transcription factor HM...    34   0.099
AF547989-1|AAN41255.1| 1130|Homo sapiens MNAR protein.                 34   0.099
U90224-1|AAB93866.1|  139|Homo sapiens deoxyuridine triphosphate...    29   3.7  
U90223-1|AAB94642.1|  252|Homo sapiens deoxyuridine triphosphate...    29   3.7  
BC110377-1|AAI10378.1|  252|Homo sapiens dUTP pyrophosphatase pr...    29   3.7  
BC070339-1|AAH70339.1|  252|Homo sapiens dUTP pyrophosphatase pr...    29   3.7  
AF018432-1|AAB71393.1|  252|Homo sapiens dUTPase protein.              29   3.7  
S74659-1|AAC60643.2|  102|Homo sapiens aggrecan keratan sulfate ...    29   4.9  
BC024325-1|AAH24325.1|  611|Homo sapiens adenosylhomocysteinase ...    29   4.9  
BC008349-1|AAH08349.1|  611|Homo sapiens adenosylhomocysteinase ...    29   4.9  
AB020635-1|BAA74851.1|  619|Homo sapiens KIAA0828 protein protein.     29   4.9  
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                28   6.5  
M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartila...    28   8.6  

>U88153-1|AAC17708.2| 1284|Homo sapiens PELP1 protein.
          Length = 1284

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 13/23 (56%), Positives = 19/23 (82%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G +P+AG +P+AG +P+AG VPS
Sbjct: 820 GSMPSAGPMPSAGPMPSAGPVPS 842



 Score = 31.5 bits (68), Expect = 0.70
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 15  SVDRGEVPAAGEVPAAGEVPAAGEVPS 41
           S+ R   P+ G +P+AG +P+AG +PS
Sbjct: 810 SILRAPCPSVGSMPSAGPMPSAGPMPS 836


>BC069058-1|AAH69058.1| 1130|Homo sapiens proline, glutamic acid and
           leucine rich protein 1 protein.
          Length = 1130

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 13/23 (56%), Positives = 19/23 (82%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G +P+AG +P+AG +P+AG VPS
Sbjct: 675 GSMPSAGPMPSAGPMPSAGPVPS 697



 Score = 31.5 bits (68), Expect = 0.70
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G +P+ G +P+AG +P+AG +PS
Sbjct: 669 GPMPSVGSMPSAGPMPSAGPMPS 691


>BC010457-1|AAH10457.2| 1048|Homo sapiens PELP1 protein protein.
          Length = 1048

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 13/23 (56%), Positives = 19/23 (82%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G +P+AG +P+AG +P+AG VPS
Sbjct: 593 GSMPSAGPMPSAGPMPSAGPVPS 615



 Score = 31.5 bits (68), Expect = 0.70
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G +P+ G +P+AG +P+AG +PS
Sbjct: 587 GPMPSVGSMPSAGPMPSAGPMPS 609


>BC002875-1|AAH02875.2|  743|Homo sapiens PELP1 protein protein.
          Length = 743

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 13/23 (56%), Positives = 19/23 (82%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G +P+AG +P+AG +P+AG VPS
Sbjct: 288 GSMPSAGPMPSAGPMPSAGPVPS 310



 Score = 31.5 bits (68), Expect = 0.70
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G +P+ G +P+AG +P+AG +PS
Sbjct: 282 GPMPSVGSMPSAGPMPSAGPMPS 304


>AY882602-1|AAW80659.1| 1061|Homo sapiens transcription factor HMX3
           protein.
          Length = 1061

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 13/23 (56%), Positives = 19/23 (82%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G +P+AG +P+AG +P+AG VPS
Sbjct: 606 GSMPSAGPMPSAGPMPSAGPVPS 628



 Score = 31.5 bits (68), Expect = 0.70
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G +P+ G +P+AG +P+AG +PS
Sbjct: 600 GPMPSVGSMPSAGPMPSAGPMPS 622


>AF547989-1|AAN41255.1| 1130|Homo sapiens MNAR protein.
          Length = 1130

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 13/23 (56%), Positives = 19/23 (82%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G +P+AG +P+AG +P+AG VPS
Sbjct: 675 GSMPSAGPMPSAGPMPSAGPVPS 697



 Score = 31.5 bits (68), Expect = 0.70
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 19  GEVPAAGEVPAAGEVPAAGEVPS 41
           G +P+ G +P+AG +P+AG +PS
Sbjct: 669 GPMPSVGSMPSAGPMPSAGPMPS 691


>U90224-1|AAB93866.1|  139|Homo sapiens deoxyuridine triphosphate
          nucleotidohydrolase, mitochondrial isoform protein.
          Length = 139

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 2  VSNGCKLESSKVASVDRGEVPAAGEVPAAG-EVPA 35
          +S GC+  S+  A+  +GE+P AG  PA G E PA
Sbjct: 63 LSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPA 97


>U90223-1|AAB94642.1|  252|Homo sapiens deoxyuridine triphosphate
          nucleotidohydrolase precursor protein.
          Length = 252

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 2  VSNGCKLESSKVASVDRGEVPAAGEVPAAG-EVPA 35
          +S GC+  S+  A+  +GE+P AG  PA G E PA
Sbjct: 63 LSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPA 97


>BC110377-1|AAI10378.1|  252|Homo sapiens dUTP pyrophosphatase
          protein.
          Length = 252

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 2  VSNGCKLESSKVASVDRGEVPAAGEVPAAG-EVPA 35
          +S GC+  S+  A+  +GE+P AG  PA G E PA
Sbjct: 63 LSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPA 97


>BC070339-1|AAH70339.1|  252|Homo sapiens dUTP pyrophosphatase
          protein.
          Length = 252

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 2  VSNGCKLESSKVASVDRGEVPAAGEVPAAG-EVPA 35
          +S GC+  S+  A+  +GE+P AG  PA G E PA
Sbjct: 63 LSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPA 97


>AF018432-1|AAB71393.1|  252|Homo sapiens dUTPase protein.
          Length = 252

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 2  VSNGCKLESSKVASVDRGEVPAAGEVPAAG-EVPA 35
          +S GC+  S+  A+  +GE+P AG  PA G E PA
Sbjct: 63 LSQGCRGASTVGAAGWKGELPKAGGSPAPGPETPA 97


>S74659-1|AAC60643.2|  102|Homo sapiens aggrecan keratan sulfate
          domain protein.
          Length = 102

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 14 ASVDRGEVPAAGEVPAAGEVPAAGEVP 40
          A+ +  E P+A EVP+A E P+  EVP
Sbjct: 3  ATEESTEGPSATEVPSASEEPSPSEVP 29


>BC024325-1|AAH24325.1|  611|Homo sapiens adenosylhomocysteinase 3
          protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 15 SVDRGEVPAAGEVPAAGEVPAAGEVP 40
          + +R  VP  G  PAA   PAAG+VP
Sbjct: 56 AAERPPVPGPGSGPAAALSPAAGKVP 81


>BC008349-1|AAH08349.1|  611|Homo sapiens adenosylhomocysteinase 3
          protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 15 SVDRGEVPAAGEVPAAGEVPAAGEVP 40
          + +R  VP  G  PAA   PAAG+VP
Sbjct: 56 AAERPPVPGPGSGPAAALSPAAGKVP 81


>AB020635-1|BAA74851.1|  619|Homo sapiens KIAA0828 protein
          protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 15 SVDRGEVPAAGEVPAAGEVPAAGEVP 40
          + +R  VP  G  PAA   PAAG+VP
Sbjct: 65 AAERPPVPGPGSGPAAALSPAAGKVP 90


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 20 EVPAAGEVPAAGEVPAAGEVPS 41
          +V A G  PAAG  PA G  PS
Sbjct: 62 DVGAGGPAPAAGAAPAGGPAPS 83


>M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartilage
           proteoglycan core protein protein.
          Length = 2316

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 20  EVPAAGEVPAAGEVPAAGEVP 40
           E P+A EVP+A E P+  EVP
Sbjct: 772 EGPSATEVPSASEEPSPSEVP 792


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.308    0.124    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,373,756
Number of Sequences: 224733
Number of extensions: 170058
Number of successful extensions: 744
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 49
length of query: 119
length of database: 73,234,838
effective HSP length: 81
effective length of query: 38
effective length of database: 55,031,465
effective search space: 2091195670
effective search space used: 2091195670
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 59 (27.9 bits)