Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001160-TA|BGIBMGA001160-PA|IPR003010|Nitrilase/cyanide
hydratase and apolipoprotein N-acyltransferase, IPR003694|NAD+
synthase
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55090.1 68414.m06292 carbon-nitrogen hydrolase family protei...   732   0.0  
At2g31060.1 68415.m03790 elongation factor family protein contai...    31   2.6  
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond...    31   3.4  
At1g53270.1 68414.m06037 ABC transporter family protein contains...    30   6.0  
At5g66840.1 68418.m08427 SAP domain-containing protein contains ...    29   7.9  

>At1g55090.1 68414.m06292 carbon-nitrogen hydrolase family protein
           low similarity to SP|P71911 Glutamine-dependent NAD(+)
           synthetase (EC 6.3.5.1) {Mycobacterium tuberculosis};
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 725

 Score =  732 bits (1810), Expect = 0.0
 Identities = 351/693 (50%), Positives = 454/693 (65%), Gaps = 2/693 (0%)

Query: 3   RKVTVAVCTLNQWALDFEGNLNRILQSIQEAKELGALYRTGPELEICGYSCEDHFHESDT 62
           R + VA C LNQWA+DFE N+  I  SI EAK  GA+ R GPELE+ GY CEDHF E DT
Sbjct: 2   RLLKVATCNLNQWAMDFESNMKNIKASIAEAKAAGAVIRLGPELEVTGYGCEDHFLELDT 61

Query: 63  YLHSWQVLVELLKSPTCKDILIDVGMPVQHRNVSYNCRVAFFNRKIILIRPKMILCDDGN 122
             H+W+ L ELL      DIL  +GMPV      YNC+V   NR+II+IRPKM L +DGN
Sbjct: 62  VTHAWECLKELLLGDWTDDILCSIGMPVIKGAERYNCQVLCMNRRIIMIRPKMWLANDGN 121

Query: 123 YRETRWFSCWTKDRQVEDFYLPRMITAVTNQSTVPIGDAVISTRDTCIGFEICEELWNPQ 182
           YRE RWF+ W +  ++E+F LP  I+    Q +VP G   I   DT +  E+CEEL++P 
Sbjct: 122 YRELRWFTAWKQREELEEFQLPIEISEALEQKSVPFGYGYIQFIDTAVAAEVCEELFSPL 181

Query: 183 SRHIPLSLDGVEIISNGSGSYMELRKAYVTVDLVKSATFKSGGAYLFSNLRGCDGQRIYF 242
             H  L+L+GVE+  N SGS+ +LRK  + ++    AT   GG Y++SN +GCDG R+Y+
Sbjct: 182 PPHAELALNGVEVFMNASGSHHQLRKLDIRLNAFMGATHARGGVYMYSNQQGCDGSRLYY 241

Query: 243 NGCSCVAVNGEIVSRGQQFGLIDVEVTTATIDLEDIRSYRAKNRSRCHLAASNKPFPRIF 302
           +GC+C+ VNG +V++G QF L DVEV  + +DL+ + S R    S    A+       + 
Sbjct: 242 DGCACIVVNGNVVAQGSQFSLRDVEVIISQVDLDAVASLRGSISSFQEQASCKVKVSSVA 301

Query: 303 VDVSLSDDEDIHLTTNPPIQWHYLSPEEEISLGPACWLWDYLRRSGQGGFFLPLSGGVDS 362
           V   L+   ++ +T + P +  Y SP+EEI+ GPACW+WDYLRRSG  GF LPLSGG DS
Sbjct: 302 VPCRLTQSFNLKMTLSSPKKIIYHSPQEEIAFGPACWMWDYLRRSGASGFLLPLSGGADS 361

Query: 363 SSTACIVFSMCTQICEAIKKGESQVLYDVRKIMCQPD-YTPSDPMELCNKLLVTCYMASE 421
           SS A IV  MC  + + I KG+ QV  D  +I    +   P+D  E   ++  T +M SE
Sbjct: 362 SSVAAIVGCMCQLVVKEIAKGDEQVKADANRIGNYANGQFPTDSKEFAKRIFYTVFMGSE 421

Query: 422 NSSRETKQRASQLASQIGSYHFPILIDTAVNAALGIFTAATGLLPIFKSKGGCPRQNLAL 481
           NSS ETK+R+ QLA +IG++H  + ID  V+A L +F   TG  P +K  GG   +NL L
Sbjct: 422 NSSEETKRRSKQLADEIGAWHLDVCIDGVVSAVLSLFQTVTGKRPRYKVDGGSNAENLGL 481

Query: 482 QNIQARIRMVLSYLFAQLMXXXXXXXXXXXXXXSSNVDEALRGYMTKYDCSSADINPIGG 541
           QNIQAR+RMVL+++ A L+              SSNVDE LRGY+TKYDCSSADINPIG 
Sbjct: 482 QNIQARMRMVLAFMLASLLPWVHSKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGS 541

Query: 542 ISKTDLKSFLHYAKNRFFLPSLSEILEAPPTAELEPLADGQITQTDEQDMGMTYAELSEF 601
           ISK DL+ FL +A      PSL+EI  APPTAELEP+     +Q DE DMGMTY ELS +
Sbjct: 542 ISKMDLRLFLKWAATNLGYPSLAEIEAAPPTAELEPIR-SDYSQLDEVDMGMTYEELSVY 600

Query: 602 GTLRKTYKCGPYSMFEKLVHKWSDKCTPKEVAEKVKHFFRCYAINRHKMTVLTPSYHAET 661
           G +RK ++CGP SMF+ L +KW  K +P EVAEKVK+FF+ Y+INRHKMTVLTPSYHAE+
Sbjct: 601 GRMRKIFRCGPVSMFKNLCYKWGTKLSPAEVAEKVKYFFKYYSINRHKMTVLTPSYHAES 660

Query: 662 YSPDDNRFDLRPFLYRVHWNWQFKTIDDAVRTI 694
           YSP+DNRFDLR FLY   W +QFK ID+ V ++
Sbjct: 661 YSPEDNRFDLRQFLYNSKWPYQFKKIDEIVDSL 693


>At2g31060.1 68415.m03790 elongation factor family protein contains
           Pfam profiles: PF00009 elongation factor Tu GTP binding
           domain, PF00679 elongation factor G C-terminus, PF03144
           elongation factor Tu domain 2
          Length = 527

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 16/39 (41%), Positives = 20/39 (51%)

Query: 139 EDFYLPRMITAVTNQSTVPIGDAVISTRDTCIGFEICEE 177
           +DFYL R++T       V +GD V   R T  G E  EE
Sbjct: 131 KDFYLGRILTGRVTSGVVRVGDRVNGLRKTDSGSEKIEE 169


>At5g53540.1 68418.m06653 MSP1 protein, putative /
           intramitochondrial sorting protein, putative similar to
           Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
           [Saccharomyces cerevisiae]; contains Pfam domain,
           PF00004: ATPase, AAA family
          Length = 403

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 375 QICEAIKKGES---QVLYDVRKIMCQPDYTPSDPMELCNK 411
           QI + + KGES    + YD    +C+ DYT SD  ELC K
Sbjct: 263 QILKVVLKGESVESDINYDRIARLCE-DYTGSDIFELCKK 301


>At1g53270.1 68414.m06037 ABC transporter family protein contains
           similarity to ABC transporter GI:10280532 from [Homo
           sapiens]
          Length = 590

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 14  QWALDFEGNLNRILQSIQEAKELGALYRTGPELEICGYSCEDHFHESDTYLHSWQVLVEL 73
           ++A+D  G+L  I    Q  +E+   Y      + C  S     H+SD++ +S    V++
Sbjct: 280 EYAIDIAGSLEPI--RTQSCREISC-YGHSKTWKSCYISAGGELHQSDSHSNSVLEEVQI 336

Query: 74  LKSPTCKDI 82
           L   +CK+I
Sbjct: 337 LGQRSCKNI 345


>At5g66840.1 68418.m08427 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 551

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 638 HFFRCYA-INRHKMTVLTPSYHAETYSPDDNRFDLRP 673
           H  R YA IN H      P YH+ TYS   N+ + RP
Sbjct: 358 HAPRSYAPINSHLPRPNIPPYHSYTYSEQQNQTNQRP 394


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,838,444
Number of Sequences: 28952
Number of extensions: 723549
Number of successful extensions: 1386
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1381
Number of HSP's gapped (non-prelim): 5
length of query: 697
length of database: 12,070,560
effective HSP length: 86
effective length of query: 611
effective length of database: 9,580,688
effective search space: 5853800368
effective search space used: 5853800368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)