GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001160-TA|BGIBMGA001160-PA|IPR003010|Nitrilase/cyanide
hydratase and apolipoprotein N-acyltransferase, IPR003694|NAD+
synthase
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...   830   0.0  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.94 
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    30   0.94 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    28   5.0  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    28   5.0  

>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score =  830 bits (2052), Expect = 0.0
 Identities = 393/691 (56%), Positives = 492/691 (71%), Gaps = 6/691 (0%)

Query: 1   MGRKVTVAVCTLNQWALDFEGNLNRILQSIQEAKELGALYRTGPELEICGYSCEDHFHES 60
           M R VT+A C LNQWA+DFEGN  RI+ SI+EAK   A  R GPELE+ GY CEDHF ES
Sbjct: 1   MERYVTIASCQLNQWAMDFEGNRLRIIDSIKEAKRQNASLRVGPELEVTGYGCEDHFLES 60

Query: 61  DTYLHSWQVLVELLKSPTCKDILIDVGMPVQHRNVSYNCRVAFFNRKIILIRPKMILCDD 120
           DTY HSW++L  ++  P C+DIL+D+GMPV H+ + +NCR+   N KI+LIRPK+ LCDD
Sbjct: 61  DTYYHSWEMLCSIIHDPDCQDILLDIGMPVMHKAMRHNCRILALNGKILLIRPKIWLCDD 120

Query: 121 GNYRETRWFSCWTKDRQVEDFYLPRMITAVTNQSTVPIGDAVISTRDTCIGFEICEELWN 180
           GN+RE+RWF+ W + R VE  YLP  +    NQ+TVPIGDA++   +T +G E CEEL+ 
Sbjct: 121 GNFRESRWFTPWLRPRVVETHYLPTFVAKSLNQTTVPIGDAILQCNETVVGVETCEELFT 180

Query: 181 PQSRHIPLSLDGVEIISNGSGSYMELRKAYVTVDLVKSATFKSGGAYLFSNLRGCDGQRI 240
           P S HI ++LDGVEI  N SGS+ ELRK    V+L+++AT K GG YL+SN RGCDG R+
Sbjct: 181 PNSPHIDMALDGVEIFINASGSHHELRKLTTRVNLIQNATEKCGGIYLYSNQRGCDGGRL 240

Query: 241 YFNGCSCVAVNGEIVSRGQQFGLIDVEVTTATIDLEDIRSYRAKNRSRCHLAASNKPFPR 300
           Y++G S +  NG+++++G QF L DVEV +AT+D++ +RSYR +  S      +   + R
Sbjct: 241 YYDGSSMIFANGKMLAQGHQFSLKDVEVISATVDVDTVRSYRFQ-PSHGIQGVTRPSYER 299

Query: 301 IFVDVSLS---DDEDIHLTTNPPIQWHYLSPEEEISLGPACWLWDYLRRSGQGGFFLPLS 357
           I V+ SLS    D DI+     PI+     PEEEI+ GPACWLWDYLRRS   GFFLPLS
Sbjct: 300 IHVNFSLSSYQQDYDIYRKPTDPIEVTIPLPEEEITFGPACWLWDYLRRSHAAGFFLPLS 359

Query: 358 GGVDSSSTACIVFSMCTQICEAIKKGESQVLYDVRKIMCQPDYTPSDPMELCNKLLVTCY 417
           GG+DS STA +V+SMC  +C+A+++ ++QVL DVR+I+  P Y+ +DP +L N L  T +
Sbjct: 360 GGLDSCSTAVLVYSMCRIVCKAMEEDDAQVLSDVRRIVGDPSYSSTDPKKLLNHLFYTAF 419

Query: 418 MASENSSRETKQRASQLASQIGSYHFPILIDTAVNAALGIFTAATGLLPIFKSKGGCPRQ 477
           M SE+SS+ET+ RA +L+S IGSYH  + IDT  +A + +F   TG  P F+S GG   +
Sbjct: 420 MGSEHSSKETRSRAKELSSLIGSYHTDVNIDTMTSAVVKLFALVTGKTPQFRSNGGTNAE 479

Query: 478 NLALQNIQARIRMVLSYLFAQLMXXXXXXXXXXXXXXSSNVDEALRGYMTKYDCSSADIN 537
           NLALQNIQAR RM+L YLFAQL+              SSNVDE LRGY+TKYDCSSADIN
Sbjct: 480 NLALQNIQARSRMLLGYLFAQLLPWVRGYSGSLLVLGSSNVDECLRGYLTKYDCSSADIN 539

Query: 538 PIGGISKTDLKSFLHYAKNRFFLPSLSEILEAPPTAELEPLADGQITQTDEQDMGMTYAE 597
           PIGGISKTDLKSFL YAK    LP L E L+A PTAELEP  +  + Q+DE DMGMTYAE
Sbjct: 540 PIGGISKTDLKSFLRYAKEALDLPILQEFLDATPTAELEPTTESYV-QSDEADMGMTYAE 598

Query: 598 LSEFGTLRKTYKCGPYSMFEKLVHKWSDKCTPKEVAEKVKHFFRCYAINRHKMTVLTPSY 657
           LS FG LRK  KCGPYSMF +L+H+W D+ +P +VAEKVK FF  Y INRHKMT LTPSY
Sbjct: 599 LSVFGRLRKISKCGPYSMFTQLMHQWGDRLSPSQVAEKVKRFFHYYGINRHKMTTLTPSY 658

Query: 658 HAETYSPDDNRFDLRPFLYRVHWNWQFKTID 688
           HAETY  DDNR+DLR FLY   W WQ K ID
Sbjct: 659 HAETYGVDDNRYDLRQFLY-PSWTWQNKKID 688


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 384 ESQVLYDVRKIMCQPDYTPSDPMELCNKLLVTCYMASENSSRETKQRAS 432
           E + + D   + C  D+ P    ELCN +L  C+   E++  +TK+  S
Sbjct: 216 EIEEMKDSNGMFCDADHVPLQGQELCNGILEECFSFLEDA--KTKEGLS 262


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 351 GFFLPLSGGVDSSSTACIVFSMCTQICEAIKKGESQVLYD----VRKIMCQPDYTPSDPM 406
           G F+PL GG +      +  ++CT++   +++  +   YD    V + +C+    P D  
Sbjct: 32  GLFVPLIGGKEPIEYVKLRENLCTKVLNELEEITTHTTYDSNARVLRQLCEHASEPVDET 91

Query: 407 ELCNKLLVTCYMASENSSRETKQRASQLASQIGSYHFPIL 446
            L    +V C  +S +   +  ++      +IG  +F +L
Sbjct: 92  GLLRTAIV-CDKSSNSMHLKFYEQLKDDMEKIGWKNFVVL 130


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 418  MASENSSRETKQRASQLASQIGSYHFPILIDTAVNAALGIFTA 460
            + SEN S +      ++ S+  S  FP+LI T +   +  F A
Sbjct: 2033 LESENQSEQALSALREIISRRSSTIFPVLIPTLIKKPVSAFNA 2075


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 273  IDLEDIRSYRAKNRSRCHLAASNK---PFPRIFVDVSLSDDEDIH 314
            IDL+D +     +    HLA   +    +P I +D  + D ED+H
Sbjct: 2022 IDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVH 2066


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,818
Number of Sequences: 5004
Number of extensions: 137092
Number of successful extensions: 269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 6
length of query: 697
length of database: 2,362,478
effective HSP length: 78
effective length of query: 619
effective length of database: 1,972,166
effective search space: 1220770754
effective search space used: 1220770754
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)