GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001160-TA|BGIBMGA001160-PA|IPR003010|Nitrilase/cyanide
hydratase and apolipoprotein N-acyltransferase, IPR003694|NAD+
synthase
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0483 + 3633010-3633203,3633652-3633957,3634598-3634821,363...   728   0.0  
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    32   1.8  
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    30   5.4  

>07_01_0483 +
           3633010-3633203,3633652-3633957,3634598-3634821,
           3635722-3635825,3636528-3636662,3637537-3637705,
           3638074-3638209,3639200-3639338,3640487-3640663,
           3640874-3641041,3641363-3641458,3642217-3642345,
           3642439-3642669
          Length = 735

 Score =  728 bits (1800), Expect = 0.0
 Identities = 351/691 (50%), Positives = 448/691 (64%), Gaps = 2/691 (0%)

Query: 3   RKVTVAVCTLNQWALDFEGNLNRILQSIQEAKELGALYRTGPELEICGYSCEDHFHESDT 62
           R + VA C LNQWA+DF+ NL  + +SI  AK  GA  R GPELE+ GY CEDHF E DT
Sbjct: 2   RLLRVATCNLNQWAMDFDTNLRNVKESIARAKAAGAAVRVGPELELTGYGCEDHFLEQDT 61

Query: 63  YLHSWQVLVELLKSPTCKDILIDVGMPVQHRNVSYNCRVAFFNRKIILIRPKMILCDDGN 122
             H+W+ L ++L       IL  +GMPV  ++V YNC+V   N KI++IRPK+ L +DGN
Sbjct: 62  AAHAWECLKDILSGGYTDGILCSIGMPVIFKSVRYNCQVFCLNSKIVMIRPKISLANDGN 121

Query: 123 YRETRWFSCWTKDRQVEDFYLPRMITAVTNQSTVPIGDAVISTRDTCIGFEICEELWNPQ 182
           YRE RWFS WT    + DF LP  I+ VT+Q TVP G   I   D  +  E CEEL+   
Sbjct: 122 YREFRWFSAWTFKDALVDFQLPLDISEVTSQDTVPFGYGFIQFLDVSLASETCEELFTAN 181

Query: 183 SRHIPLSLDGVEIISNGSGSYMELRKAYVTVDLVKSATFKSGGAYLFSNLRGCDGQRIYF 242
           +  I L+L+GVE+  N SGS+ +LRK  + +D +++AT   GG Y+++N +GCDG R+Y+
Sbjct: 182 APRIDLALNGVEVFVNASGSHHQLRKLSLRIDSMRNATLACGGVYMYANQQGCDGGRLYY 241

Query: 243 NGCSCVAVNGEIVSRGQQFGLIDVEVTTATIDLEDIRSYRAKNRSRCHLAASNKPFPRIF 302
           +GC C+AVNG++V++G QF L DVEV  A +DL+ + SYRA   S    A+     P + 
Sbjct: 242 DGCCCIAVNGDVVAQGSQFSLKDVEVLDALVDLDAVSSYRASVSSFREQASHRTKVPFVK 301

Query: 303 VDVSLSDDEDIHLTTNPPIQWHYLSPEEEISLGPACWLWDYLRRSGQGGFFLPLSGGVDS 362
           V   L       +    P++  Y  PEEEI+ GP+CWLWDYLRRS   GF LPLSGG DS
Sbjct: 302 VPYKLCKPFQSGMVPTGPVEVMYHRPEEEIAFGPSCWLWDYLRRSRASGFLLPLSGGADS 361

Query: 363 SSTACIVFSMCTQICEAIKKGESQVLYDVRKIMCQPD-YTPSDPMELCNKLLVTCYMASE 421
           SS A IV  MC  + + I+ G+ QV  D  +I    D   P D  EL  +L  T YM +E
Sbjct: 362 SSVAAIVGCMCQLVVKDIENGDEQVKADAMRIGQYKDGEFPKDSRELAKRLFYTVYMGTE 421

Query: 422 NSSRETKQRASQLASQIGSYHFPILIDTAVNAALGIFTAATGLLPIFKSKGGCPRQNLAL 481
           NSS  T+ RA  LA +IGS+H  + ID+ V+A L +F   TG  P +K  GG   +NL L
Sbjct: 422 NSSEGTRSRAKMLAEEIGSFHLDVPIDSIVSALLSLFERLTGKRPRYKVDGGSNTENLGL 481

Query: 482 QNIQARIRMVLSYLFAQLMXXXXXXXXXXXXXXSSNVDEALRGYMTKYDCSSADINPIGG 541
           QNIQARIRMVL+++ A LM              SSNVDE LRGY+TKYDCSSADINPIG 
Sbjct: 482 QNIQARIRMVLAFMMASLMPWVHNKSGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGS 541

Query: 542 ISKTDLKSFLHYAKNRFFLPSLSEILEAPPTAELEPLADGQITQTDEQDMGMTYAELSEF 601
           +SK DL++FL +A       SL+E+  APPTAELEP+      Q DE DMGMTY ELS +
Sbjct: 542 VSKQDLRAFLRWAAVHLHYSSLAEVEAAPPTAELEPIR-ADYNQLDEVDMGMTYEELSIY 600

Query: 602 GTLRKTYKCGPYSMFEKLVHKWSDKCTPKEVAEKVKHFFRCYAINRHKMTVLTPSYHAET 661
           G LRK ++CGP SMF+ L H+W    +P EVA+KVKHFF+ YAINRHKMTVLTPSYHAE+
Sbjct: 601 GRLRKIFRCGPVSMFQNLCHRWCGTLSPSEVADKVKHFFKYYAINRHKMTVLTPSYHAES 660

Query: 662 YSPDDNRFDLRPFLYRVHWNWQFKTIDDAVR 692
           YSP+DNRFDLR FLY   W +QF+ ID+ V+
Sbjct: 661 YSPEDNRFDLRQFLYNARWPYQFRKIDELVQ 691


>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
            25898932-25901013,25901155-25901730,25904503-25905648,
            25907056-25908693
          Length = 2225

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 615  MFEKLVHKWSDKCTPKEVAEKVKHFFRCYAINRHKMTVLTPSY 657
            +  K  +K  ++CT +E  EK+KH  +   +N   +  LTPSY
Sbjct: 1649 VLNKCNYKLRERCTSREDKEKIKH-IKTIDMNEVPLMYLTPSY 1690


>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 17/78 (21%), Positives = 40/78 (51%)

Query: 145 RMITAVTNQSTVPIGDAVISTRDTCIGFEICEELWNPQSRHIPLSLDGVEIISNGSGSYM 204
           ++++ ++ +  +P  D V +     +G+ + E   +  S  +P+SL  +E++ +   + +
Sbjct: 145 QVVSILSEKVLLPEADNVAAGSPRGLGYHVAEVFLDELSPVLPVSLQTMEVLLSPFFAVL 204

Query: 205 ELRKAYVTVDLVKSATFK 222
           E     V V  VKS+ F+
Sbjct: 205 EKSSDRVMVAKVKSSVFE 222


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,691,522
Number of Sequences: 37544
Number of extensions: 883413
Number of successful extensions: 1479
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1475
Number of HSP's gapped (non-prelim): 3
length of query: 697
length of database: 14,793,348
effective HSP length: 87
effective length of query: 610
effective length of database: 11,527,020
effective search space: 7031482200
effective search space used: 7031482200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)